View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9836_low_42 (Length: 312)
Name: NF9836_low_42
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 36373780 - 36373892
Alignment:
| Q |
187 |
aggataccaaatcaaaaaatgattttcttatctatgaaaattctaccttccttttgaaagttaattttccattcgtgcttgaaagagctgcacatttgat |
286 |
Q |
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| T |
36373780 |
aggataccaaatcaaaaaatgatgttcttatctatgaaaattctaccttccttttgaaagttaattttccattggtgcttgaaagagctgcacatttgat |
36373879 |
T |
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| Q |
287 |
aactttcacacct |
299 |
Q |
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| T |
36373880 |
aactttcacacct |
36373892 |
T |
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Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 36373596 - 36373690
Alignment:
| Q |
15 |
atgataacccgcttgtacaaacttaaaaagtttcacaaaatatcttatgaaaaagggcctattatgtgattcaatttaataatatcttcgataat |
109 |
Q |
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| T |
36373596 |
atgataacctgcttgtacaagcttaaaaagtttcacaaaatatcttatgaaaaaggacctattatatgatttaatctaataatatcttcgataat |
36373690 |
T |
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