View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9836_low_43 (Length: 297)

Name: NF9836_low_43
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9836_low_43
NF9836_low_43
[»] chr6 (9 HSPs)
chr6 (1-281)||(2621316-2621596)
chr6 (1-279)||(2589749-2590027)
chr6 (1-274)||(2674920-2675193)
chr6 (1-274)||(2571429-2571702)
chr6 (1-268)||(2435919-2436186)
chr6 (1-274)||(2449098-2449371)
chr6 (1-274)||(2643071-2643344)
chr6 (1-168)||(2598288-2598455)
chr6 (1-73)||(33788355-33788427)
[»] chr8 (1 HSPs)
chr8 (1-103)||(27731272-27731374)
[»] chr4 (1 HSPs)
chr4 (37-82)||(31440455-31440500)


Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 2621316 - 2621596
Alignment:
Q  1 ttgcaagagctatcataaaaatgccaaaaattctattgctagatgaagcaacaagtgcactagattctgaatccgaaagagttgtccaagaagctttaga 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621316 ttgcaagagctatcataaaaatgccaaaaattcttttgctagatgaagcaacaagtgcactagattctgaatccgaaagagttgtccaagaagctttaga 2621415  T
Q  101 caaagccaccgttggacgcaccaccatcatcattgctcaccgcttatccaccattcaaaatgcagacatcattgcggttgttcaaaatggtatgatcgca 200  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2621416 caaagccaccgttggacgcaccaccatcatcatcgctcaccgcttatccaccattcaaaatgcagacatcattgcggttgttcaaaatggtatgatcgcg 2621515  T
Q  201 gaaacaggatctcatgaaagcctcatgcaaaatgacaattctctttacgcctcccttgttcgtctccagcaaacaaaaaag 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621516 gaaacaggatctcatgaaagcctcatgcaaaatgacaattctctttacgcctcccttgttcgtctccagcaaacaaaaaag 2621596  T

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Target: chr6; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 2589749 - 2590027
Alignment:
Q  1 ttgcaagagctatcataaaaatgccaaaaattctattgctagatgaagcaacaagtgcactagattctgaatccgaaagagttgtccaagaagctttaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||| ||||    
T  2589749 ttgcaagagctatcataaaaatgccaaaaattctattgctagatgaagcaacaagtgcactcgattctgaatcagaaagggttgtccaagaagctctaga 2589848  T
Q  101 caaagccaccgttggacgcaccaccatcatcattgctcaccgcttatccaccattcaaaatgcagacatcattgcggttgttcaaaatggtatgatcgca 200  Q
    |||||| |||||||||||||||||||||||||| ||||||||| |||| ||||| |||||||||||||||||||| |||||||||||||||| |||        
T  2589849 caaagctaccgttggacgcaccaccatcatcatcgctcaccgcctatctaccatccaaaatgcagacatcattgcagttgttcaaaatggtaagattatg 2589948  T
Q  201 gaaacaggatctcatgaaagcctcatgcaaaatgacaattctctttacgcctcccttgttcgtctccagcaaacaaaaa 279  Q
    |||| ||||||||| ||||||||| ||||| ||||||||||  |||| ||||||||||||||||| || ||||||||||    
T  2589949 gaaataggatctcacgaaagcctcgtgcaagatgacaattcaatttatgcctcccttgttcgtcttcaacaaacaaaaa 2590027  T

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Target: chr6; HSP #3
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 2675193 - 2674920
Alignment:
Q  1 ttgcaagagctatcataaaaatgccaaaaattctattgctagatgaagcaacaagtgcactagattctgaatccgaaagagttgtccaagaagctttaga 100  Q
    |||||||||| || ||||||||||| |||||| |||| ||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||| ||||    
T  2675193 ttgcaagagccataataaaaatgcctaaaattttattactagatgaagcaacaagtgcacttgattctgaatccgaacgagttgttcaagaagctctaga 2675094  T
Q  101 caaagccaccgttggacgcaccaccatcatcattgctcaccgcttatccaccattcaaaatgcagacatcattgcggttgttcaaaatggtatgatcgca 200  Q
    ||||||  | ||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||||| ||||       
T  2675093 caaagcggcggttggacgcaccaccatcatcatcgctcaccgcttatcaaccatccaaaatgcagacatcattgcagttgtccaaaatggtaagatcatg 2674994  T
Q  201 gaaacaggatctcatgaaagcctcatgcaaaatgacaattctctttacgcctcccttgttcgtctccagcaaac 274  Q
    ||||| |||||||| |||||||||||||||||||| |||||||||||| ||||||| ||||||||||| |||||    
T  2674993 gaaacgggatctcacgaaagcctcatgcaaaatgaaaattctctttacacctccctcgttcgtctccaacaaac 2674920  T

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Target: chr6; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 2571702 - 2571429
Alignment:
Q  1 ttgcaagagctatcataaaaatgccaaaaattctattgctagatgaagcaacaagtgcactagattctgaatccgaaagagttgtccaagaagctttaga 100  Q
    |||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| |||| |||||||||||| ||||    
T  2571702 ttgcaagagccatcataaaaatgccaaaaattctattgttagacgaagcaacaagtgcactcgattctgaatccgaacgagtcgtccaagaagctctaga 2571603  T
Q  101 caaagccaccgttggacgcaccaccatcatcattgctcaccgcttatccaccattcaaaatgcagacatcattgcggttgttcaaaatggtatgatcgca 200  Q
    ||||||  | |||||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||| |||||||| |||||||||||| || ||       
T  2571602 caaagctgcagttggacgaaccaccatcatcatcgctcaccgcttatctaccatccaaaatgcagacattattgcggtcgttcaaaatggtctggtcatg 2571503  T
Q  201 gaaacaggatctcatgaaagcctcatgcaaaatgacaattctctttacgcctcccttgttcgtctccagcaaac 274  Q
    ||||  |||||||| || |||||||||||||||||||||||||||||| | ||||||||||||||||| |||||    
T  2571502 gaaatgggatctcacgatagcctcatgcaaaatgacaattctctttacacatcccttgttcgtctccaacaaac 2571429  T

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Target: chr6; HSP #5
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 2435919 - 2436186
Alignment:
Q  1 ttgcaagagctatcataaaaatgccaaaaattctattgctagatgaagcaacaagtgcactagattctgaatccgaaagagttgtccaagaagctttaga 100  Q
    |||||||||| ||  |||||||||||||||||||||||||||| |||||||||||||| || ||||||||||| ||| ||||||||||||||||| ||||    
T  2435919 ttgcaagagccatagtaaaaatgccaaaaattctattgctagacgaagcaacaagtgctctcgattctgaatctgaacgagttgtccaagaagctctaga 2436018  T
Q  101 caaagccaccgttggacgcaccaccatcatcattgctcaccgcttatccaccattcaaaatgcagacatcattgcggttgttcaaaatggtatgatcgca 200  Q
    ||||||    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||       
T  2436019 caaagctgtagttggacgcaccaccatcatcatcgctcaccgcttatccaccatccaaaatgcagacatcattgcagttgttcaaaatggtaagatcatg 2436118  T
Q  201 gaaacaggatctcatgaaagcctcatgcaaaatgacaattctctttacgcctcccttgttcgtctcca 268  Q
    |||||||||||||| |||||||||||||||||||||| |||  ||||| | ||||| |||| ||||||    
T  2436119 gaaacaggatctcacgaaagcctcatgcaaaatgacagttccatttacacatccctagttcatctcca 2436186  T

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Target: chr6; HSP #6
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 2449098 - 2449371
Alignment:
Q  1 ttgcaagagctatcataaaaatgccaaaaattctattgctagatgaagcaacaagtgcactagattctgaatccgaaagagttgtccaagaagctttaga 100  Q
    |||||||||| || || ||||  |||| ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||    
T  2449098 ttgcaagagccataatcaaaaatccaagaattctattgctagacgaagcaacaagtgcactagattttgaatccgaacgagttgtccaagaagcttttga 2449197  T
Q  101 caaagccaccgttggacgcaccaccatcatcattgctcaccgcttatccaccattcaaaatgcagacatcattgcggttgttcaaaatggtatgatcgca 200  Q
     |||||||| |||| |||||||||||| ||||| ||||||||||||||||||||   || |||||| ||||||||  | ||||||||||||| |||||      
T  2449198 gaaagccacagttgaacgcaccaccattatcatcgctcaccgcttatccaccatcagaactgcagatatcattgcaatcgttcaaaatggtaagatcgtg 2449297  T
Q  201 gaaacaggatctcatgaaagcctcatgcaaaatgacaattctctttacgcctcccttgttcgtctccagcaaac 274  Q
    |||||||||||||| |||||||| |||||||||||||  ||||||||| ||||||| |||||||| || |||||    
T  2449298 gaaacaggatctcacgaaagccttatgcaaaatgacagctctctttacacctccctcgttcgtcttcaacaaac 2449371  T

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Target: chr6; HSP #7
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 2643344 - 2643071
Alignment:
Q  1 ttgcaagagctatcataaaaatgccaaaaattctattgctagatgaagcaacaagtgcactagattctgaatccgaaagagttgtccaagaagctttaga 100  Q
    |||||||||| || ||||||||||| |||||| ||||| | || ||||| ||||||||||| ||||||||||||||| || |||||||||| ||| ||||    
T  2643344 ttgcaagagccataataaaaatgcctaaaattttattgttggacgaagcgacaagtgcacttgattctgaatccgaacgaattgtccaagacgctctaga 2643245  T
Q  101 caaagccaccgttggacgcaccaccatcatcattgctcaccgcttatccaccattcaaaatgcagacatcattgcggttgttcaaaatggtatgatcgca 200  Q
    ||||| | | ||||||||||| ||||||||||| ||||| ||| |||||||||| |||||||| ||||||||||| ||  |||||||||| | |||        
T  2643244 caaagtcgcagttggacgcacaaccatcatcatcgctcatcgcctatccaccatccaaaatgctgacatcattgcagtgtttcaaaatggcaagataatg 2643145  T
Q  201 gaaacaggatctcatgaaagcctcatgcaaaatgacaattctctttacgcctcccttgttcgtctccagcaaac 274  Q
    ||||||||| ||||||||||||||  |||| |||| |||||||||||| |||| || ||||||||||| |||||    
T  2643144 gaaacaggaactcatgaaagcctcgcgcaagatgaaaattctctttacacctctctcgttcgtctccaacaaac 2643071  T

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Target: chr6; HSP #8
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 2598455 - 2598288
Alignment:
Q  1 ttgcaagagctatcataaaaatgccaaaaattctattgctagatgaagcaacaagtgcactagattctgaatccgaaagagttgtccaagaagctttaga 100  Q
    |||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| |||| |||||||||||| ||||    
T  2598455 ttgcaagagccatcataaaaatgccaaaaattctattgttagacgaagcaacaagtgcactcgattctgaatccgaacgagtcgtccaagaagctctaga 2598356  T
Q  101 caaagccaccgttggacgcaccaccatcatcattgctcaccgcttatccaccattcaaaatgcagaca 168  Q
    ||||||  | ||||||||||||||||||||||| |||||||| ||||| ||||| |||||||||||||    
T  2598355 caaagcttcagttggacgcaccaccatcatcatcgctcaccgattatctaccatccaaaatgcagaca 2598288  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 33788427 - 33788355
Alignment:
Q  1 ttgcaagagctatcataaaaatgccaaaaattctattgctagatgaagcaacaagtgcactagattctgaatc 73  Q
    |||||||||||||||||||||  |||  ||||||  |||| ||||||||||| |||||||| || ||||||||    
T  33788427 ttgcaagagctatcataaaaaatccagtaattcttctgcttgatgaagcaactagtgcacttgactctgaatc 33788355  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 27731272 - 27731374
Alignment:
Q  1 ttgcaagagctatcataaaaatgccaaaaattctattgctagatgaagcaacaagtgcactagattctgaatccgaaagagttgtccaagaagctttaga 100  Q
    |||||||||||||  ||| ||  || |||||  ||||||| ||||||||||||||||||||||||   ||||| ||| | ||||| ||| ||||||||||    
T  27731272 ttgcaagagctattttaagaaaccctaaaatattattgcttgatgaagcaacaagtgcactagatgtcgaatcggaacgtgttgtacaacaagctttaga 27731371  T
Q  101 caa 103  Q
    |||    
T  27731372 caa 27731374  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 31440455 - 31440500
Alignment:
Q  37 tgctagatgaagcaacaagtgcactagattctgaatccgaaagagt 82  Q
    |||| |||||||||||||||||||| |||||| |||||||||||||    
T  31440455 tgcttgatgaagcaacaagtgcactggattctcaatccgaaagagt 31440500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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