View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9836_low_46 (Length: 283)
Name: NF9836_low_46
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 23 - 273
Target Start/End: Complemental strand, 39411816 - 39411562
Alignment:
| Q |
23 |
ggggaattgatgtttaagatataaaaaccatctccattatactccagtgaagtgagattgaggcagtccactaacatcaattttaaatccatcatgatat |
122 |
Q |
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| T |
39411816 |
ggggcattgatgttcaagatataaaaaccatctccattatactccaacgaagtgacgttaaggcagtgccctaacattagtttcaaatctgtcatggtat |
39411717 |
T |
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| Q |
123 |
tgttggatgccttata----gcaacctgtaaccttgagatggcataaagatgaacttactatctttggtgttgatgatttaaacttacaagaatctaagt |
218 |
Q |
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| T |
39411716 |
tgttgaatgccttatatatagcaacctgttaccttgaaatggcataaagatgatcttactatctttggtgttgatgatttgaaattacaagaagctaagt |
39411617 |
T |
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| Q |
219 |
agagctcttcaagtagtagacaattagataacaaactttctatgaacatttcatc |
273 |
Q |
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| T |
39411616 |
agagctcttcaagtagtagacaatcagggaacaaactttctatgaacatttcatc |
39411562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 145 - 272
Target Start/End: Complemental strand, 39403477 - 39403350
Alignment:
| Q |
145 |
tgtaaccttgagatggcataaagatgaacttactatctttggtgttgatgatttaaacttacaagaatctaagtagagctcttcaagtagtagacaatta |
244 |
Q |
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| T |
39403477 |
tgtaaccttgagatggcataaagatgaacttacgatctttggtgttgatgatttaaacttacaagaatctaaatagagctcttcaagtagtagacaatta |
39403378 |
T |
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| Q |
245 |
gataacaaactttctatgaacatttcat |
272 |
Q |
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| T |
39403377 |
gataccaaactttctatgaacatttcat |
39403350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 168 - 273
Target Start/End: Complemental strand, 47927373 - 47927268
Alignment:
| Q |
168 |
atgaacttactatctttggtgttgatgatttaaacttacaagaatctaagtagagctcttcaagtagtagacaattagataacaaactttctatgaacat |
267 |
Q |
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||||| |||||||||||||| ||||| |||| |||| |||| || ||||| | ||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
47927373 |
atgaatttactatctttggtattgataatttgaactcacaataaactaagcaaagctcttcaagcagtccacaattagataacaaactttctatgaacat |
47927274 |
T |
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| Q |
268 |
ttcatc |
273 |
Q |
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|||||| |
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| T |
47927273 |
ttcatc |
47927268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 136 - 273
Target Start/End: Original strand, 48108016 - 48108153
Alignment:
| Q |
136 |
atagcaacctgtaaccttgagatggcataaagatgaacttactatctttggtgttgatgatttaaacttacaagaatctaagtagagctcttcaagtagt |
235 |
Q |
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| T |
48108016 |
atagcaccctatagccttgagatgacatagagatgaacttactatctctggcattaatgatttcaattcacaaaaaagtaagcaaagctcttcaagttgt |
48108115 |
T |
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| Q |
236 |
agacaattagataacaaactttctatgaacatttcatc |
273 |
Q |
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| T |
48108116 |
ggacaattagataacaaactttcaatgaaagtttcatc |
48108153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 273
Target Start/End: Original strand, 48453940 - 48454021
Alignment:
| Q |
192 |
atgatttaaacttacaagaatctaagtagagctcttcaagtagtagacaattagataacaaactttctatgaacatttcatc |
273 |
Q |
| |
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||||||| |||| |||| ||||||||| ||||||||||| ||||||||||||| |||||||||| ||||| |||||||| |
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| T |
48453940 |
atgatttgaactcacaacaatctaagtgaagctcttcaagccgtagacaattagacaacaaacttttgatgaatatttcatc |
48454021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 47928608 - 47928556
Alignment:
| Q |
120 |
tattgttggatgccttatagcaacctgtaaccttgagatggcataaagatgaa |
172 |
Q |
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| T |
47928608 |
tattgttagataccttatagcaatttgtaaccttgagatgacataaggatgaa |
47928556 |
T |
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