View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9836_low_48 (Length: 274)
Name: NF9836_low_48
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 6 - 259
Target Start/End: Complemental strand, 36147426 - 36147170
Alignment:
| Q |
6 |
gtttggagtttcaatcattgtcccagttgagtctacaatatatatgatagatatacatataagagaaatgcgatannnnnnnataatagatgttattata |
105 |
Q |
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| T |
36147426 |
gttttgagtttcaatcattgttccagttgagtctacaatatatatgatagatatacatataagagaaatgcgatatttttttataatagatgttattata |
36147327 |
T |
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| Q |
106 |
ggtttatggtataataaatttttgaaatatgtgtaaaaagtagtatctc---tatatggaatactctatatatagaaccactgaatagctgaagcatgac |
202 |
Q |
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| T |
36147326 |
ggtttatggtataataaatttttgaaatatgtgtaaaaagtagtatctctaatatatggaatactctatatatagaaccactgaatagctgaagcatgac |
36147227 |
T |
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| Q |
203 |
tacgatatattgcnnnnnnngaacaacctgtacgtgtatctacataaactccttttt |
259 |
Q |
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| T |
36147226 |
tacgatatattgcaaaaaaagaacaacctgtacgtgtatctacataaactccttttt |
36147170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 156
Target Start/End: Complemental strand, 36080212 - 36080174
Alignment:
| Q |
118 |
aataaatttttgaaatatgtgtaaaaagtagtatctcta |
156 |
Q |
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| T |
36080212 |
aataaattttttaaatatgtgtaaaaagttgtatctcta |
36080174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 168
Target Start/End: Original strand, 26529618 - 26529669
Alignment:
| Q |
118 |
aataaatttttgaaatatgt-gtaaaaagtagtatctctatatggaatactc |
168 |
Q |
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| T |
26529618 |
aataaatttttgaaatatgtggtaaaaagcaatatctctatatgggatactc |
26529669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 26528508 - 26528557
Alignment:
| Q |
11 |
gagtttcaatcattgtcccagttgagtctacaatatatatgatagatata |
60 |
Q |
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| T |
26528508 |
gagtttcaatcgttgctcctgttgagtctacaatatatataatagatata |
26528557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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