View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9836_low_5 (Length: 597)
Name: NF9836_low_5
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 439; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 549
Target Start/End: Original strand, 28954260 - 28954816
Alignment:
| Q |
1 |
tgacatgcatttagttatgatctgaagtt------tcagtttcagcagagaaagttcccatcttttgtatatcagaatcagatcagaaccaaaagagtta |
94 |
Q |
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| T |
28954260 |
tgacatgcatttagttatgatctgaagtttcagtttcagtttcagcagagaaagttcccatcttttgtatatcagaatcagatcagaaccaaaagagtta |
28954359 |
T |
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| Q |
95 |
gtatttttgaaaaagggaagtgtgatgtgtaagttcaaaaataaacaatgtgattaatttgtgtatttttgaaaaacaaggatgagaatggaattttggt |
194 |
Q |
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| T |
28954360 |
gtatttttgaaaaagggaagtgtgatgtgtaagttcaaaaataaacaatgtgattaatttgtgtatttttgaaaaacaaggatgagaatggaactttggt |
28954459 |
T |
|
| Q |
195 |
acaaagtgagtttgaagtcattgtcttatagctataaataattaaatatccacctccaaagtacgattcctttgtattttggcacttattgactgtaatt |
294 |
Q |
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| T |
28954460 |
acaaagtgagtttgaagttattgtcttatagctataaataattaaatatccacctccaaagtacgattcctttgtattttggcacttattgactgtaatt |
28954559 |
T |
|
| Q |
295 |
ttttaaatatctttcagtgttttttggcgcaatgtaaaaagaatttcacaccacatatactannnnnnnatgcaaataggaattcatttatatgtatata |
394 |
Q |
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| T |
28954560 |
ttttaaatatctttcagtgttttttggcgcaatgtaaaaagaatttcacaccacatatactatttttttatgcaaataggaattcatttatatgtatata |
28954659 |
T |
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| Q |
395 |
aatttgtattgtactattgtttattaaggtcaacagagaata------ttttaaaattttcaactacatgtcctttttctttgatagtgactgttcaccg |
488 |
Q |
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| T |
28954660 |
aatttgtattg---tattgtttattaaggtcaacagagaatatgcaattttttaaattttcaactacatgtcctttttctttgatagtgactgttcaccg |
28954756 |
T |
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| Q |
489 |
gatcnnnnnnnttatagcaaaacatgcttaaatcaactgtttgcgtaattaaaaagattaa |
549 |
Q |
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| T |
28954757 |
gatcaaaaaaattatagcaaaacatgcttaaatcaactg-ttgcgtaattaaaaagattaa |
28954816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 547 - 578
Target Start/End: Original strand, 28955658 - 28955689
Alignment:
| Q |
547 |
taattaatttgtgttctagtagttatttgatg |
578 |
Q |
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| T |
28955658 |
taattaatttgtgttctagtagttatttgatg |
28955689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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