View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9836_low_52 (Length: 254)
Name: NF9836_low_52
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 16942953 - 16943171
Alignment:
| Q |
18 |
aaacggttcccacaaggcttcccagctgaatgtattaccagtaaaccacacaaattgtaatataaaagtgtaaaagctcggatttatatcctctatggcg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16942953 |
aaacggttcccacaaggcttcccagctgaatgtattaccagtaaaccacacaaattgtaatataaaagtgtaaaagctcggatttatatcctctatggcg |
16943052 |
T |
|
| Q |
118 |
gttgcacaatgcagcggcctttggaatcgttagatctcgagagtgaaactttttctcattagatctaatggttttagaggccgcatcatgcagtggtcat |
217 |
Q |
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||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
16943053 |
gttgcacaatgcaatggcctttagaatcgttagatctcgagagtgaaactttttctcattagatttaatggttttagaggccgcatcatgcagtggccat |
16943152 |
T |
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| Q |
218 |
agaggactcctacataaaa |
236 |
Q |
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|||||||||||||| |||| |
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| T |
16943153 |
agaggactcctacacaaaa |
16943171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 17013618 - 17013836
Alignment:
| Q |
18 |
aaacggttcccacaaggcttcccagctgaatgtattaccagtaaaccacacaaattgtaatataaaagtgtaaaagctcggatttatatcctctatggcg |
117 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17013618 |
aaacggttcccacaaggcttcccagctgaatgtattaccagtaaaccacacaaattgtaatataaaagtgtaaaagctcggatttatatcctctatggcg |
17013717 |
T |
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| Q |
118 |
gttgcacaatgcagcggcctttggaatcgttagatctcgagagtgaaactttttctcattagatctaatggttttagaggccgcatcatgcagtggtcat |
217 |
Q |
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||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
17013718 |
gttgcacaatgcaatggcctttagaatcgttagatctcgagagtgaaactttttctcattagatttaatggttttagaggccgcatcatgcagtggccat |
17013817 |
T |
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| Q |
218 |
agaggactcctacataaaa |
236 |
Q |
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|||||||||||||| |||| |
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| T |
17013818 |
agaggactcctacacaaaa |
17013836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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