View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9836_low_55 (Length: 253)
Name: NF9836_low_55
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_low_55 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 412089 - 411860
Alignment:
| Q |
1 |
atcatttaccccaaacctctgctgcataaatgtaaaacttcgtgagatgagaaatgtaatgcgtttattatttccattttggttattgatgcacagatga |
100 |
Q |
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| T |
412089 |
atcatttaccccaaacctctgctgcataaatgtaaaacttcgtgagatgagaaatgtaatgcgtttattatttccattttggttattgatgcacagatga |
411990 |
T |
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| Q |
101 |
gtggaccaactttcttgagcgagtgaaatgttctagcgaggaggaacttaaaggaaatgaatctgaagagttagaagaagagcttcgtctatgggcatca |
200 |
Q |
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| T |
411989 |
gtggaccaactttcttcagcgagtgaaatgttctagcgaggaggaacttaaaggaaatgaatctgaagagttagaagaagagcttcgtctatgggcatca |
411890 |
T |
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| Q |
201 |
tatagagggcagactttgacaagaactggt |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
411889 |
tatagagggcagactttgacaagaactggt |
411860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 230
Target Start/End: Original strand, 52614334 - 52614464
Alignment:
| Q |
94 |
cagatgagtggaccaactttcttgagcgagtgaaatgttctagcgaggaggaacttaaaggaaatgaatctgaagagttagaagaagagcttcgtctatg |
193 |
Q |
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||||||| |||| ||||||||| |||||||||| ||||| | ||| ||||||||||||| ||| ||| |||||||||||||||||||||| || |
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| T |
52614334 |
cagatgaatggaacaactttctgcagcgagtgaattgttccaacgaagaggaacttaaag------aatatgatgagttagaagaagagcttcgtcgctg |
52614427 |
T |
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| Q |
194 |
ggcatcatatagagggcagactttgacaagaactggt |
230 |
Q |
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||||||||| |||| || |||||||| ||||||||| |
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| T |
52614428 |
ggcatcataccgaggacaaactttgaccagaactggt |
52614464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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