View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9836_low_6 (Length: 591)
Name: NF9836_low_6
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 222 - 478
Target Start/End: Complemental strand, 41965454 - 41965198
Alignment:
| Q |
222 |
tctggcttaagtagaattcgtcgaaaacatcatgttagtaatggcaaccgtgtttcaccataaatcgcattagacatacatcaatgttgtgatttatttt |
321 |
Q |
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| T |
41965454 |
tctggcttaagtagaattcgtcgaaaaaatcatgttagtaatggcaaccgtgtttcaccataaatcgcattagacatacatcaatgttgtgatttatttt |
41965355 |
T |
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| Q |
322 |
aatttgcttttatccttcaaaatcaaattctctatatagacatagatggaccggaaggtatgaagctcacctttgggataatacttgtagaagggaaggt |
421 |
Q |
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| T |
41965354 |
aatttgcttttatccttcaaaatcaaattctctatatagacatagatggaccggaaggtatgaagctcacctttgggataatacttgtagaagggaaggt |
41965255 |
T |
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| Q |
422 |
caatcaagaaaaggacgtcaaggtaacaacaaattaacttcaaaccacttaatgttt |
478 |
Q |
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| T |
41965254 |
cagtcaagaaaaggacgtcaaggtaacaacaaattaacttcaaaccacttaatgttt |
41965198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 41965721 - 41965545
Alignment:
| Q |
18 |
agaaaaccctaacaataatctgcagtcattgacattatcaatgggaagtggtactactaaggattccacatgtgataataatatcgttgaagcagctgca |
117 |
Q |
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| T |
41965721 |
agaaaaccctaacaataatctgcagtcattgacattatcaatgggaagtggtactactaaggattccacatgtgataataatatcgttgaagcagctgca |
41965622 |
T |
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| Q |
118 |
acacctagaagagctttggatacctttggccaaagaacatcaatatatcgtggtgtaacaaggtttgaaaatatatt |
194 |
Q |
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| T |
41965621 |
acacctagaagagctttggatacctttggccaaagaacatcaatatatcgtggtgtaacaaggtttgaaaatatatt |
41965545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 545 - 583
Target Start/End: Complemental strand, 41965113 - 41965075
Alignment:
| Q |
545 |
actaacacatttccatttttcttcatcttgccctatgct |
583 |
Q |
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| T |
41965113 |
actaacacatttccatttttcttcatcttgccctatgct |
41965075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 226
Target Start/End: Complemental strand, 41965551 - 41965522
Alignment:
| Q |
197 |
atatattgtttaaattttttgcatgtctgg |
226 |
Q |
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| T |
41965551 |
atatattgtttaaattttttgcatgtctgg |
41965522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 356 - 447
Target Start/End: Complemental strand, 24563213 - 24563122
Alignment:
| Q |
356 |
tatagacatagatggaccggaaggtatgaagctcacctttgggataatacttgtagaagggaaggtcaatcaagaaaaggacgtcaaggtaa |
447 |
Q |
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| T |
24563213 |
tatagacatagatggactggaaggtatgaagctcacctttgggataacagctgtagaagggaaggtcagtcgagaaaaggccgccaaggtaa |
24563122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 362 - 414
Target Start/End: Complemental strand, 30620032 - 30619980
Alignment:
| Q |
362 |
catagatggaccggaaggtatgaagctcacctttgggataatacttgtagaag |
414 |
Q |
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| T |
30620032 |
catagatggacagggagatatgaagctcacctttgggataatagttgtagaag |
30619980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 358 - 407
Target Start/End: Complemental strand, 16869959 - 16869910
Alignment:
| Q |
358 |
tagacatagatggaccggaaggtatgaagctcacctttgggataatactt |
407 |
Q |
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| T |
16869959 |
tagacatagatggaccggaaggtttgaagctcatctatgggataagactt |
16869910 |
T |
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