View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9836_low_60 (Length: 250)
Name: NF9836_low_60
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_low_60 |
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| [»] scaffold0115 (2 HSPs) |
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Alignment Details
Target: scaffold0115 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 5497 - 5737
Alignment:
| Q |
1 |
tagctattatctccaccatcaaagaacattaactaatttccaaccaaaggagggcaagaataagtactttaactcaccacaattatccacaaccaaattt |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
5497 |
tagctattatctccaccatcaaagaacattcactaatttccaaccaaaggagggcaagaataagtaccttaactcaccataattatccacaaccaaattt |
5596 |
T |
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| Q |
101 |
gtcaatttgcaaaaggaatgttgattgtcaccccaaactttgttccaatttaatgagctcaaggtaatgatatccaaattaggaaatgcaaccaacatag |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5597 |
gtcaatttgcaaaatgaatgttgattgtcaccccaaactttgttccaatttaatgagctcaaggtaaggatatccaaattaggaaatgcaaccaacatag |
5696 |
T |
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| Q |
201 |
aaccagaaggtgatttgctgctattgttgttgttcctatgc |
241 |
Q |
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| T |
5697 |
aaccagagggtgatttactgctattgttgttgttcctatgc |
5737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 13237 - 13477
Alignment:
| Q |
1 |
tagctattatctccaccatcaaagaacattaactaatttccaaccaaaggagggcaagaataagtactttaactcaccacaattatccacaaccaaattt |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
13237 |
tagctattatctccaccatcaaagaacattcactaatttccaaccaaaggagggcaagaataagtaccttaactcaccataattatccacaaccaaattt |
13336 |
T |
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| Q |
101 |
gtcaatttgcaaaaggaatgttgattgtcaccccaaactttgttccaatttaatgagctcaaggtaatgatatccaaattaggaaatgcaaccaacatag |
200 |
Q |
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| T |
13337 |
gtcaatttgcaaaatgaatgttgattgtcaccccaaactttgttccaatttaatgagctcaaggtaaggatatccaaattaggaaatgcaaccaacatag |
13436 |
T |
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| Q |
201 |
aaccagaaggtgatttgctgctattgttgttgttcctatgc |
241 |
Q |
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| T |
13437 |
aaccagagggtgatttactgctattgttgttgttcctatgc |
13477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 241
Target Start/End: Original strand, 8480360 - 8480592
Alignment:
| Q |
12 |
tccaccatcaaagaacattaactaatttccaaccaaaggagggcaagaataagtactttaactcaccacaattatccacaaccaaatttgtcaatttgca |
111 |
Q |
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| T |
8480360 |
tccaccatcaaagaacatttactaatttccaaccaaaggagggcaagaataagtactttaactcaccacaattatccacaacgaaatttgtcaatttgca |
8480459 |
T |
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| Q |
112 |
aaaggaatgttgattgtcaccccaaactttgttccaattta---atgagctcaaggtaatgatatccaaattaggaaatgcaaccaacatagaaccagaa |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||| |||| |
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| T |
8480460 |
aaaggaatgttgattgtcaccccaaactttgttccaatttaatgatgagctcaaggtaaggatatccaaattatgaaatgcaaccaacatagaatcagag |
8480559 |
T |
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| Q |
209 |
ggtgatttgctgctattgttgttgttcctatgc |
241 |
Q |
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| T |
8480560 |
ggtgatttgctgctattgttgttgttcctatgc |
8480592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 49 - 202
Target Start/End: Original strand, 19345091 - 19345244
Alignment:
| Q |
49 |
ggagggcaagaataagtactttaactcaccacaattatccacaaccaaatttgtcaatttgcaaaaggaatgttgattgtcaccccaaactttgttccaa |
148 |
Q |
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| T |
19345091 |
ggaggacaagaataagtactttaactcaccacaattatccacaaccaaatttgtcaatttgtaaaaggaatgttgattgtcaccccaaactttgctcaaa |
19345190 |
T |
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| Q |
149 |
tttaatgagctcaaggtaatgatatccaaattaggaaatgcaaccaacatagaa |
202 |
Q |
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||||||||||||||||||| | ||||||||||||||| ||||||| |||||||| |
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| T |
19345191 |
tttaatgagctcaaggtaagggtatccaaattaggaagtgcaacctacatagaa |
19345244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 19345018 - 19345057
Alignment:
| Q |
1 |
tagctattatctccaccatcaaagaacattaactaatttc |
40 |
Q |
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| T |
19345018 |
tagctattatctccaccatcaaagaacatttactaatttc |
19345057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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