View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9836_low_61 (Length: 248)

Name: NF9836_low_61
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9836_low_61
NF9836_low_61
[»] chr4 (4 HSPs)
chr4 (1-230)||(24262144-24262373)
chr4 (19-206)||(38466053-38466241)
chr4 (115-196)||(5453915-5453996)
chr4 (144-195)||(28023765-28023816)
[»] chr5 (2 HSPs)
chr5 (73-215)||(30443114-30443257)
chr5 (115-196)||(43026837-43026918)
[»] chr1 (1 HSPs)
chr1 (73-215)||(25226407-25226550)
[»] chr7 (6 HSPs)
chr7 (73-215)||(14231637-14231780)
chr7 (73-202)||(1264361-1264491)
chr7 (73-202)||(48847447-48847577)
chr7 (18-215)||(26906986-26907184)
chr7 (144-194)||(43907944-43907994)
chr7 (73-196)||(34576982-34577106)
[»] chr6 (4 HSPs)
chr6 (73-215)||(21999583-21999726)
chr6 (73-215)||(31891701-31891844)
chr6 (91-172)||(4095773-4095855)
chr6 (159-196)||(2267671-2267708)
[»] chr3 (11 HSPs)
chr3 (73-215)||(24759207-24759350)
chr3 (73-215)||(24826664-24826807)
chr3 (73-215)||(33648566-33648709)
chr3 (73-215)||(37984510-37984653)
chr3 (73-215)||(53025112-53025255)
chr3 (88-215)||(31687310-31687438)
chr3 (73-196)||(17689099-17689219)
chr3 (115-196)||(925427-925508)
chr3 (115-196)||(44703344-44703425)
chr3 (88-184)||(53545111-53545208)
chr3 (159-196)||(36155298-36155335)
[»] chr8 (3 HSPs)
chr8 (73-206)||(8163563-8163697)
chr8 (159-196)||(18207912-18207949)
chr8 (159-195)||(16804564-16804600)


Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 24262144 - 24262373
Alignment:
Q  1 tagaagaaagtgaggcgagatgatgtacacacaccaaaatttctaaacattattaatttaactagtctttcgaatcacaagataacattgaaagttgaag 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||    
T  24262144 tagaagaaagtgaggccagatgatgtacacacaccaaaatttctaaacattattaatttaactagtttttcgaatcacaagataacattgaaagttggag 24262243  T
Q  101 ttcctgttatgttttgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaaagatggggagatatgtttttgaagggagg 200  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  24262244 ttcctgttatgttttgagaaatttggacataacagcaggtttgtgtaatggtacttgattgataattacaaagatggggatatatgtttttgaagggagg 24262343  T
Q  201 gttataccaagaagcgggattggggagaag 230  Q
    ||||||| | ||||||||||||||||||||    
T  24262344 gttatactaggaagcgggattggggagaag 24262373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 38466241 - 38466053
Alignment:
Q  19 gatgatgtacacacaccaaaatttctaaacattattaatttaactagtctttcgaatcacaagataacattgaaagttgaagttcctgttatgtt-ttga 117  Q
    |||||||||||||||||| ||||| | |||  ||||||||   |  ||||| | |||||||| |||   |||||||||| ||||||| ||||||| ||||    
T  38466241 gatgatgtacacacaccagaattttttaactctattaattcttccggtcttccaaatcacaaaatatgtttgaaagttggagttcctattatgttgttga 38466142  T
Q  118 gaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaaagatggggagatatgtttttgaagggagggttata 206  Q
    |||||||||| |  |||||||   | |||||||| ||||| || ||  ||||||||||||| | |||| || |||||||  ||||||||    
T  38466141 gaaatttggatattacagcagacatttgtaatggaactcggttaattcttacaaagatgggaatatatattcttgaaggcggggttata 38466053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 196
Target Start/End: Original strand, 5453915 - 5453996
Alignment:
Q  115 tgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaaagatggggagatatgtttttgaagg 196  Q
    |||| ||||||||| ||||  |||| || |||||||| ||| ||||||| |||||||||||||| ||||||||  |||||||    
T  5453915 tgaggaatttggacccaactacaggcctttgtaatggaactagattgattattacaaagatgggaagatatgtgcttgaagg 5453996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 195
Target Start/End: Original strand, 28023765 - 28023816
Alignment:
Q  144 tgtaatggtactcgattgataattacaaagatggggagatatgtttttgaag 195  Q
    |||||||||| ||| ||||||||||||||| |||| ||||||||| ||||||    
T  28023765 tgtaatggtattcggttgataattacaaagttgggtagatatgttcttgaag 28023816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 73 - 215
Target Start/End: Complemental strand, 30443257 - 30443114
Alignment:
Q  73 aatcacaagataacattgaaagttgaagttcctgttatgtt-ttgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaa 171  Q
    ||||||||||| || |||||||||| ||||||| ||||||| |||||||||||||||| |||||||||| ||||||||||||||||| | ||| | || |    
T  30443257 aatcacaagattactttgaaagttggagttcctattatgttgttgagaaatttggacataacagcaggtttgtgtaatggtactcgactaatagtcacta 30443158  T
Q  172 agatggggagatatgtttttgaagggagggttataccaagaagc 215  Q
    ||||||| ||||||||| ||||||||||||| ||| || |||||    
T  30443157 agatgggaagatatgttattgaagggagggtaatatcaggaagc 30443114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 115 - 196
Target Start/End: Complemental strand, 43026918 - 43026837
Alignment:
Q  115 tgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaaagatggggagatatgtttttgaagg 196  Q
    |||||||||||||| |||| ||||| || |||||||| ||| ||||||| |||||||||||||| ||||||||  |||||||    
T  43026918 tgagaaatttggacccaactgcaggcctttgtaatggaactagattgattattacaaagatgggaagatatgtgcttgaagg 43026837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 73 - 215
Target Start/End: Original strand, 25226407 - 25226550
Alignment:
Q  73 aatcacaagataacattgaaagttgaagttcctgttatgtt-ttgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaa 171  Q
    ||||||||||| || |||||||||| ||||||| ||||||| |||||||||||||||| |||||||||| ||||||||||||||||| | ||| | || |    
T  25226407 aatcacaagattactttgaaagttggagttcctattatgttgttgagaaatttggacataacagcaggtttgtgtaatggtactcgactaatagtcacta 25226506  T
Q  172 agatggggagatatgtttttgaagggagggttataccaagaagc 215  Q
    ||||||| ||||||||| ||||||||||||| ||| || |||||    
T  25226507 agatgggaagatatgttattgaagggagggtaatatcaggaagc 25226550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 73 - 215
Target Start/End: Original strand, 14231637 - 14231780
Alignment:
Q  73 aatcacaagataacattgaaagttgaagttcctgttatgtt-ttgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaa 171  Q
    ||||||||||| || |||||||||| ||||||| |||| || |||||||||||||||| |||||||||| ||||||||||||||||| | ||| | || |    
T  14231637 aatcacaagattactttgaaagttggagttcctattatattgttgagaaatttggacataacagcaggtttgtgtaatggtactcgactaatagtcacta 14231736  T
Q  172 agatggggagatatgtttttgaagggagggttataccaagaagc 215  Q
    ||||||| ||||||||| ||||||||||||| ||| || |||||    
T  14231737 agatgggaagatatgttattgaagggagggtaatatcaggaagc 14231780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 73 - 202
Target Start/End: Original strand, 1264361 - 1264491
Alignment:
Q  73 aatcacaagataacattgaaagttgaagttcctgttatgtt-ttgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaa 171  Q
    ||||||||||| || |||||||||| ||||||| ||||||| |||||||||||||||| |||||||||| ||||||||||||||||| | ||  | || |    
T  1264361 aatcacaagattactttgaaagttggagttcctattatgttgttgagaaatttggacataacagcaggtttgtgtaatggtactcgactaatggtcacta 1264460  T
Q  172 agatggggagatatgtttttgaagggagggt 202  Q
    ||||||| ||||||||| |||||||||||||    
T  1264461 agatgggaagatatgttattgaagggagggt 1264491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 73 - 202
Target Start/End: Complemental strand, 48847577 - 48847447
Alignment:
Q  73 aatcacaagataacattgaaagttgaagttcctgttatgtt-ttgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaa 171  Q
    ||||||||||| || |||||||||| ||||||| ||||||| |||||||||||||||| |||||||||| ||||||||||||||||| | ||  | || |    
T  48847577 aatcacaagattactttgaaagttggagttcctattatgttgttgagaaatttggacataacagcaggtttgtgtaatggtactcgactaatggtcacta 48847478  T
Q  172 agatggggagatatgtttttgaagggagggt 202  Q
    ||||||| ||||||||| |||||||||||||    
T  48847477 agatgggaagatatgttattgaagggagggt 48847447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 26907184 - 26906986
Alignment:
Q  18 agatgatgtacacacaccaaaatttctaaacattattaatttaactagtctttcgaatcacaagataacattgaaagttgaagttcctgttatgtt-ttg 116  Q
    ||||||| | ||||||||| ||||  | |||| ||| |||| | | |||||| | ||||||||||| |  |||||||||| ||||||| ||||| | ||     
T  26907184 agatgatattcacacaccagaattcttgaacactatcaattcatcaagtcttcctaatcacaagattattttgaaagttggagttcctattatgctgttt 26907085  T
Q  117 agaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaaagatggggagatatgtttttgaagggagggttataccaagaagc 215  Q
    ||||||||||||| |||||||||  ||||||||||||||||| | ||| | || |||||||| ||||||||| |||||||||| |||||| || |||||    
T  26907084 agaaatttggacataacagcagggttgtgtaatggtactcgactaatagtcactaagatgggaagatatgttattgaagggagagttatatcaggaagc 26906986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 43907944 - 43907994
Alignment:
Q  144 tgtaatggtactcgattgataattacaaagatggggagatatgtttttgaa 194  Q
    |||||||||||||| ||||||||||||||| |||| |||||| || |||||    
T  43907944 tgtaatggtactcggttgataattacaaagttgggtagatatattcttgaa 43907994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 196
Target Start/End: Original strand, 34576982 - 34577106
Alignment:
Q  73 aatcacaagataacattgaaagttgaagttcctgttatgtt-ttgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaa 171  Q
    |||||||| ||||  || ||||||| ||| ||| ||||||| ||||||||| | |||  | ||| ||| || || ||||||||| | ||||||||||| |    
T  34576982 aatcacaaaataaagttaaaagttggagtacctattatgttgttgagaaatctagaccaatcagtaggactatgcaatggtactaggttgataattacca 34577081  T
Q  172 agatggggagatatgtttttgaagg 196  Q
    | ||||| ||||||||| |||||||    
T  34577082 aaatgggtagatatgttcttgaagg 34577106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 73 - 215
Target Start/End: Complemental strand, 21999726 - 21999583
Alignment:
Q  73 aatcacaagataacattgaaagttgaagttcctgttatgtt-ttgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaa 171  Q
    ||||||||||| || |||||||||| ||||||| ||||||| |||||||||||||||| ||||||| || ||||||||||||||||| | ||| | || |    
T  21999726 aatcacaagattactttgaaagttggagttcctattatgttgttgagaaatttggacataacagcatgtttgtgtaatggtactcgactaatagtcacta 21999627  T
Q  172 agatggggagatatgtttttgaagggagggttataccaagaagc 215  Q
    ||||||| ||||||||| ||||||||||||| ||| || |||||    
T  21999626 agatgggaagatatgttattgaagggagggtaatatcatgaagc 21999583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 73 - 215
Target Start/End: Complemental strand, 31891844 - 31891701
Alignment:
Q  73 aatcacaagataacattgaaagttgaagttcctgttatgtt-ttgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaa 171  Q
    ||||||||||| || |||||||||| ||||| | ||||||| |||||||||||| ||| |||| ||||| ||||||||||||||||| | ||  | || |    
T  31891844 aatcacaagattactttgaaagttggagttcttattatgttgttgagaaatttgaacataacaacaggtttgtgtaatggtactcgactaatggtcacta 31891745  T
Q  172 agatggggagatatgtttttgaagggagggttataccaagaagc 215  Q
    ||||||| ||||||||| ||||||||||||| ||| || |||||    
T  31891744 agatgggaagatatgttattgaagggagggtaatatcaggaagc 31891701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 172
Target Start/End: Original strand, 4095773 - 4095855
Alignment:
Q  91 aaagttgaagttcctgttatgtt-ttgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaaa 172  Q
    ||||||| ||| ||||| ||||| |||||||||||||||  | | ||||| || |||||||||||  ||||||||||||||||    
T  4095773 aaagttggagtccctgtgatgttattgagaaatttggaccaatccgcaggcctatgtaatggtacaagattgataattacaaa 4095855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 2267708 - 2267671
Alignment:
Q  159 ttgataattacaaagatggggagatatgtttttgaagg 196  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  2267708 ttgataattacaaagatgggtagatatgttcttgaagg 2267671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 73 - 215
Target Start/End: Complemental strand, 24759350 - 24759207
Alignment:
Q  73 aatcacaagataacattgaaagttgaagttcctgttatgtt-ttgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaa 171  Q
    ||||||||||| || || ||||||| |||| || ||||||| |||||||||||||||| ||||| |||  ||||||||||||||||| ||||| | || |    
T  24759350 aatcacaagattactttaaaagttggagttactattatgttgttgagaaatttggacataacagtagggttgtgtaatggtactcgactgatagtcacta 24759251  T
Q  172 agatggggagatatgtttttgaagggagggttataccaagaagc 215  Q
    ||||||| ||||||||| || |||||||||||||| || |||||    
T  24759250 agatgggaagatatgttcttaaagggagggttatatcaggaagc 24759207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 73 - 215
Target Start/End: Original strand, 24826664 - 24826807
Alignment:
Q  73 aatcacaagataacattgaaagttgaagttcctgttatgttt-tgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaa 171  Q
    ||||||||||| || || ||||||| |||| || |||||||  ||||||||||||||| ||||| |||  ||||||||||||||||| ||||| | || |    
T  24826664 aatcacaagattactttaaaagttggagttactattatgttgctgagaaatttggacataacagtagggttgtgtaatggtactcgactgatagtcacta 24826763  T
Q  172 agatggggagatatgtttttgaagggagggttataccaagaagc 215  Q
    ||||||| ||||||||| || |||||||||||||| || |||||    
T  24826764 agatgggaagatatgttcttaaagggagggttatatcaggaagc 24826807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 73 - 215
Target Start/End: Complemental strand, 33648709 - 33648566
Alignment:
Q  73 aatcacaagataacattgaaagttgaagttcctgttatgttt-tgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaa 171  Q
    ||||||||||| || || ||||||| |||| || |||||||  ||||||||||||||| ||||| |||  ||||||||||||||||| ||||| | || |    
T  33648709 aatcacaagattactttaaaagttggagttactattatgttgctgagaaatttggacataacagtagggttgtgtaatggtactcgactgatagtcacta 33648610  T
Q  172 agatggggagatatgtttttgaagggagggttataccaagaagc 215  Q
    ||||||| ||||||||| || |||||||||||||| || |||||    
T  33648609 agatgggaagatatgttcttaaagggagggttatatcaggaagc 33648566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 73 - 215
Target Start/End: Original strand, 37984510 - 37984653
Alignment:
Q  73 aatcacaagataacattgaaagttgaagttcctgttatgtt-ttgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaa 171  Q
    ||||||||||| || |||||||||| ||||||| ||||||| |||||||||||||||| || | || || ||||||||||||||||| | ||  | || |    
T  37984510 aatcacaagattactttgaaagttggagttcctattatgttgttgagaaatttggacataataacatgtttgtgtaatggtactcgactaatggtcacta 37984609  T
Q  172 agatggggagatatgtttttgaagggagggttataccaagaagc 215  Q
    ||||||| ||||||||| ||||||||||||| ||| || |||||    
T  37984610 agatgggaagatatgttattgaagggagggtaatatcaggaagc 37984653  T

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Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 73 - 215
Target Start/End: Complemental strand, 53025255 - 53025112
Alignment:
Q  73 aatcacaagataacattgaaagttgaagttcctgttatgtt-ttgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaa 171  Q
    ||||||||||| || || ||||||| |||| || ||||||| |||||||||||||||| ||||| |||  ||||||||||||||||| | ||| | || |    
T  53025255 aatcacaagattactttaaaagttggagttactattatgttgttgagaaatttggacataacagtagggttgtgtaatggtactcgactaatagtcacta 53025156  T
Q  172 agatggggagatatgtttttgaagggagggttataccaagaagc 215  Q
    ||||||| ||||||||| || |||||||||||||| || |||||    
T  53025155 agatgggaagatatgttcttaaagggagggttatatcaggaagc 53025112  T

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Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 215
Target Start/End: Original strand, 31687310 - 31687438
Alignment:
Q  88 ttgaaagttgaagttcctgttatgtt-ttgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaaagatggggagatatg 186  Q
    |||||||||| ||||||| ||||||| |||||||||||||||| || ||| ||| ||||||||||||||||| | ||  | || |||||||| |||||||    
T  31687310 ttgaaagttggagttcctattatgttgttgagaaatttggacataatagctggtttgtgtaatggtactcgactaatggtcactaagatgggaagatatg 31687409  T
Q  187 tttttgaagggagggttataccaagaagc 215  Q
    || ||||||||||||| ||| || |||||    
T  31687410 ttattgaagggagggtaatatcaggaagc 31687438  T

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Target: chr3; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 73 - 196
Target Start/End: Original strand, 17689099 - 17689219
Alignment:
Q  73 aatcacaagataacattgaaagttgaagttcctgttatgttttgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaaa 172  Q
    ||||||||||| || |||||||||| ||||||| |||||||  |||||||||||||| |||| || || ||||||||||||||||| | ||| | |  ||    
T  17689099 aatcacaagattactttgaaagttggagttccttttatgtt--gagaaatttggacataacaacacgtttgtgtaatggtactcgactaatagtca-taa 17689195  T
Q  173 gatggggagatatgtttttgaagg 196  Q
    |||||| ||||||||| |||||||    
T  17689196 gatgggaagatatgttattgaagg 17689219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 196
Target Start/End: Original strand, 925427 - 925508
Alignment:
Q  115 tgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaaagatggggagatatgtttttgaagg 196  Q
    |||| ||||||||| |||| ||||| || || ||||| ||| ||||||| |||||||||||||| ||||||||  |||||||    
T  925427 tgaggaatttggacccaactgcaggcctttgcaatggaactagattgattattacaaagatgggaagatatgtgcttgaagg 925508  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 196
Target Start/End: Complemental strand, 44703425 - 44703344
Alignment:
Q  115 tgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaaagatggggagatatgtttttgaagg 196  Q
    |||| ||||||||| |||| ||||| || |||||||| ||| ||||||| |||||||||||||| | ||||||  |||||||    
T  44703425 tgaggaatttggacccaactgcaggcctttgtaatggaactagattgattattacaaagatgggaaaatatgtgcttgaagg 44703344  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 184
Target Start/End: Original strand, 53545111 - 53545208
Alignment:
Q  88 ttgaaagttgaagttcctgttatgtt-ttgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaaagatggggagata 184  Q
    |||||||| | ||| ||||| ||||| ||||||||||| ||| ||||||||||||| || ||||| || ||  ||||||| ||||||||||| |||||    
T  53545111 ttgaaagtcggagtacctgtcatgttgttgagaaatttagacccaacagcaggtctttgcaatggaacacgcctgataataacaaagatgggcagata 53545208  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 36155298 - 36155335
Alignment:
Q  159 ttgataattacaaagatggggagatatgtttttgaagg 196  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  36155298 ttgataattacaaagatgggtagatatgttcttgaagg 36155335  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 73 - 206
Target Start/End: Original strand, 8163563 - 8163697
Alignment:
Q  73 aatcacaagataacattgaaagttgaagttcctgttatgtt-ttgagaaatttggacacaacagcaggtctgtgtaatggtactcgattgataattacaa 171  Q
    ||||||||||| || |||||||||| ||||||| ||||||| |||||||||||||||| |||| || |  ||||||||||||||||| | ||| | |  |    
T  8163563 aatcacaagattactttgaaagttggagttcctattatgttgttgagaaatttggacataacatcatggttgtgtaatggtactcgactaatagtcatta 8163662  T
Q  172 agatggggagatatgtttttgaagggagggttata 206  Q
    ||||||| ||||||||| |||||||||| ||||||    
T  8163663 agatgggaagatatgttattgaagggagagttata 8163697  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 18207912 - 18207949
Alignment:
Q  159 ttgataattacaaagatggggagatatgtttttgaagg 196  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  18207912 ttgataattacaaagatgggtagatatgttcttgaagg 18207949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 16804564 - 16804600
Alignment:
Q  159 ttgataattacaaagatggggagatatgtttttgaag 195  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  16804564 ttgataattacaaagatgggtagatatgttcttgaag 16804600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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