View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9836_low_71 (Length: 240)
Name: NF9836_low_71
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_low_71 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 11029484 - 11029706
Alignment:
| Q |
1 |
ccacgtttataatccatatctcaaaaaataaaatatgtctagaaaatcatgtgtgataatttcttgcgttgaaccagcctagaagatccattttcgtaac |
100 |
Q |
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| T |
11029484 |
ccacgcttataatccagatctcaaaaaataaaatatgtctagaaaatcatgtgtgataatttcttgcgttgaaccagcctaggagatccatttttgtaac |
11029583 |
T |
|
| Q |
101 |
atggttttaattgaatttggatttgatattgttatgacaaggagtggagatcaagtttttattttattttaagaaaattaaattaacaataaaaagcata |
200 |
Q |
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| T |
11029584 |
atggttttaattgaatttggatttgatattgttatgacaaggagtggagatcaagtttttattttattttaagaaaattaaattaacaataaaaagcata |
11029683 |
T |
|
| Q |
201 |
gacaagagaagaagagttggaac |
223 |
Q |
| |
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|||||| ||||||||||| |||| |
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| T |
11029684 |
gacaagggaagaagagtttgaac |
11029706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 195
Target Start/End: Original strand, 16250363 - 16250401
Alignment:
| Q |
157 |
ttttattttattttaagaaaattaaattaacaataaaaa |
195 |
Q |
| |
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| T |
16250363 |
ttttattttattttaagaaaattaaatcaacaataaaaa |
16250401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 30930333 - 30930297
Alignment:
| Q |
157 |
ttttattttattttaagaaaattaaattaacaataaa |
193 |
Q |
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| T |
30930333 |
ttttattttattttaagaaaattaaatcaacaataaa |
30930297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 14168141 - 14168177
Alignment:
| Q |
157 |
ttttattttattttaagaaaattaaattaacaataaa |
193 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||| |
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| T |
14168141 |
ttttattttattttaagaaaattaaatcaacaataaa |
14168177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 573634 - 573576
Alignment:
| Q |
156 |
tttttattttattttaagaaaattaaattaacaataaaaagcatagacaagagaagaag |
214 |
Q |
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||||||||||||||||| |||||||||||||||| ||||| | | ||||| ||||||| |
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| T |
573634 |
tttttattttattttaaagaaattaaattaacaatgaaaagtacaaacaagggaagaag |
573576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 49244818 - 49244761
Alignment:
| Q |
156 |
tttttattttattttaagaaaattaaattaacaataaaaagcatagacaagagaagaa |
213 |
Q |
| |
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||||||||||||||||| |||||||||||||||| ||||| | | ||||| |||||| |
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| T |
49244818 |
tttttattttattttaaagaaattaaattaacaatgaaaagtacaaacaagggaagaa |
49244761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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