View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9836_low_72 (Length: 240)

Name: NF9836_low_72
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9836_low_72
NF9836_low_72
[»] chr7 (7 HSPs)
chr7 (18-226)||(1300436-1300644)
chr7 (18-220)||(8658344-8658543)
chr7 (110-207)||(8666489-8666586)
chr7 (145-220)||(3146372-3146447)
chr7 (110-207)||(8672070-8672167)
chr7 (110-176)||(8645950-8646016)
chr7 (112-169)||(8653261-8653318)
[»] chr1 (2 HSPs)
chr1 (18-220)||(4679539-4679738)
chr1 (77-220)||(29464888-29465032)
[»] chr2 (1 HSPs)
chr2 (77-220)||(16658508-16658648)
[»] chr4 (1 HSPs)
chr4 (77-207)||(9336892-9337022)


Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 1300436 - 1300644
Alignment:
Q  18 ccaacaagatctccagctccttgagatgatcctcaacaacatctattttctgctgtttgttgttattcttatcaagcaagcttgttgtgacggtaattgc 117  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1300436 ccaacaaaatctccagctccttgagatgatcctcaacaacatctattttctgctgtttgttgttattcttatcaagcaagcttgttgtgacggtaattgc 1300535  T
Q  118 attgttgatcttttccctttctttacgggagagatttaaattaacatccttcttctttaaggcattcttcactttgtaaacacaataatccaaagcattc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1300536 attgttgatcttttccctttctttacgggagagatttaaattaacatccttcttctttaaggcattcttcactttgtaaacacaataatccaaatcattc 1300635  T
Q  218 atttctgtg 226  Q
    ||| |||||    
T  1300636 attactgtg 1300644  T

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Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 8658344 - 8658543
Alignment:
Q  18 ccaacaagatctccagctccttgagatgatcctcaacaacatctattttctgctgtttgttgttattcttatcaagcaagcttgttgtgacggtaattgc 117  Q
    |||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||   ||||| || ||||||| ||||||  | |||| ||||    
T  8658344 ccaacatgatttccagctccttcagatgatcctcaacaacatctattttctgctgtttgtt---attctcatgaagcaagtttgttgccaaggtagttgc 8658440  T
Q  118 attgttgatcttttccctttctttacgggagagatttaaattaacatccttcttctttaaggcattcttcactttgtaaacacaataatccaaagcattc 217  Q
    ||||||||||||||||||||||  ||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||    
T  8658441 attgttgatcttttccctttctccacgggagaggtttaaattaacatccttcttttttaacgcattcttcactttgtaaacacaataatccaaatcattc 8658540  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 207
Target Start/End: Original strand, 8666489 - 8666586
Alignment:
Q  110 gtaattgcattgttgatcttttccctttctttacgggagagatttaaattaacatccttcttctttaaggcattcttcactttgtaaacacaataatc 207  Q
    ||||||||||||||||||||| |  |||||| | |||||||| | | ||||||||||||||||||||| || |||||||  |||||||||||| ||||    
T  8666489 gtaattgcattgttgatctttgcaatttcttgaggggagagaatcagattaacatccttcttctttaaagccttcttcatattgtaaacacaagaatc 8666586  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 3146372 - 3146447
Alignment:
Q  145 ggagagatttaaattaacatccttcttctttaaggcattcttcactttgtaaacacaataatccaaagcattcatt 220  Q
    ||||||||||| ||| ||||||||||||||||| ||||| ||||  ||||||||||||||||| || |||||||||    
T  3146372 ggagagatttatattcacatccttcttctttaaagcatttttcatcttgtaaacacaataatctaatgcattcatt 3146447  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 207
Target Start/End: Complemental strand, 8672167 - 8672070
Alignment:
Q  110 gtaattgcattgttgatcttttccctttctttacgggagagatttaaattaacatccttcttctttaaggcattcttcactttgtaaacacaataatc 207  Q
    ||||||||||||||||||||| |  |||||| | |||||||| | | ||||||||  ||||||| ||| || |||||||  |||||||||||| ||||    
T  8672167 gtaattgcattgttgatctttgcaatttcttgaggggagagaatcagattaacattgttcttctctaaagcgttcttcatattgtaaacacaagaatc 8672070  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 176
Target Start/End: Original strand, 8645950 - 8646016
Alignment:
Q  110 gtaattgcattgttgatcttttccctttctttacgggagagatttaaattaacatccttcttcttta 176  Q
    ||||||||||| |||||||| ||  ||||||||   ||||||||||| |||||||||||| ||||||    
T  8645950 gtaattgcattattgatcttgtcattttctttagatgagagatttaatttaacatccttcctcttta 8646016  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 8653261 - 8653318
Alignment:
Q  112 aattgcattgttgatcttttccctttctttacgggagagatttaaattaacatccttc 169  Q
    ||||||||||||||||||||| ||||||| | ||||||   ||| |||||||||||||    
T  8653261 aattgcattgttgatcttttcactttcttgaggggagatgattagattaacatccttc 8653318  T

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Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 4679738 - 4679539
Alignment:
Q  18 ccaacaagatctccagctccttgagatgatcctcaacaacatctattttctgctgtttgttgttattcttatcaagcaagcttgttgtgacggtaattgc 117  Q
    |||||| | |||||| |||||| ||||||||||||| |||||||||||  | ||||   | ||||||||||||||||||| | || |  || ||||||||    
T  4679738 ccaacatgctctccaactccttcagatgatcctcaagaacatctatttctttctgt---tcgttattcttatcaagcaagttggtggccactgtaattgc 4679642  T
Q  118 attgttgatcttttccctttctttacgggagagatttaaattaacatccttcttctttaaggcattcttcactttgtaaacacaataatccaaagcattc 217  Q
    || |||||||||||| ||||| | ||  ||||| |||||||||||||||||||||||||| |||||||| |  |||||||||||| | ||||| ||| ||    
T  4679641 atcgttgatcttttcactttcatcacaagagagctttaaattaacatccttcttctttaaagcattcttgatattgtaaacacaaaattccaatgcactc 4679542  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 220
Target Start/End: Original strand, 29464888 - 29465032
Alignment:
Q  77 ttgttattcttatcaagcaagcttgttgtgacggtaattgcattgttgatcttttccctttctttacggga-gagatttaaattaacatccttcttcttt 175  Q
    ||||||||||||||||||||  |    | ||| |||||||||||||||||||| || ||||||| | |||| |||  | ||||||||| |||||||||||    
T  29464888 ttgttattcttatcaagcaaattcacagagacagtaattgcattgttgatcttctcactttcttgatgggaagagcatcaaattaacaaccttcttcttt 29464987  T
Q  176 aaggcattcttcactttgtaaacacaataatccaaagcattcatt 220  Q
    || | ||||||||  |||||||||||| |||| || ||| |||||    
T  29464988 aatgtattcttcatattgtaaacacaagaatctaatgcactcatt 29465032  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 220
Target Start/End: Complemental strand, 16658648 - 16658508
Alignment:
Q  77 ttgttattcttatcaagcaagcttgttgtgacggtaattgcattgttgatcttttccctttctttacgggagagatttaaattaacatccttcttcttta 176  Q
    |||||||||||||||||||| ||||| |  || |||||||||||||||||||| ||  |||||| |  |||||| |||||||| |||||    |||||||    
T  16658648 ttgttattcttatcaagcaaacttgtggccacagtaattgcattgttgatcttctcaatttcttgagaggagagctttaaattcacatc---tttcttta 16658552  T
Q  177 aggcattcttcactttgtaaacacaataatccaaagcattcatt 220  Q
    | ||||||||||  |||||||||||||||||||| |||||||||    
T  16658551 aagcattcttcatattgtaaacacaataatccaatgcattcatt 16658508  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 207
Target Start/End: Complemental strand, 9337022 - 9336892
Alignment:
Q  77 ttgttattcttatcaagcaagcttgttgtgacggtaattgcattgttgatcttttccctttctttacgggagagatttaaattaacatccttcttcttta 176  Q
    ||||||||||||||||||||  |  | |  || |||||||||||||||||||| ||  |||||| | | | |||| | | ||||||||  ||||||||||    
T  9337022 ttgttattcttatcaagcaaattcatagcaacagtaattgcattgttgatcttctcaatttcttgaggcgtgagaatcagattaacattgttcttcttta 9336923  T
Q  177 aggcattcttcactttgtaaacacaataatc 207  Q
    | || |||||||  |||||||||||| ||||    
T  9336922 aagcgttcttcatattgtaaacacaagaatc 9336892  T

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