View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9836_low_76 (Length: 237)
Name: NF9836_low_76
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_low_76 |
 | |
|
| [»] chr5 (18 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
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|
Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 18)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 30676094 - 30675858
Alignment:
| Q |
1 |
gccgatctgacggcgaaacatgatgttctttgggttgaaagaggatgagcctccaagtcgagcagactcgatcgaacactcatcaaggatatcatcgagc |
100 |
Q |
| |
|
|||||||| || ||||||||||||||||||||| |||| ||||||||| |||| |||| || |||||| ||| ||| ||||||||||||||||||||||| |
|
|
| T |
30676094 |
gccgatctcactgcgaaacatgatgttctttggtttgagagaggatgatcctctaagttgaccagacttgattgaatactcatcaaggatatcatcgagc |
30675995 |
T |
|
| Q |
101 |
acataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgatgtgaacta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30675994 |
acataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaacagccttgatgtgaacta |
30675895 |
T |
|
| Q |
201 |
agttgtctgatagcttttgagcctttgatttgattcc |
237 |
Q |
| |
|
|||||| ||||||||||||| ||||||| |||||||| |
|
|
| T |
30675894 |
agttgtttgatagcttttgaacctttgacttgattcc |
30675858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 30484712 - 30484937
Alignment:
| Q |
12 |
ggcgaaacatgatgttctttgggttgaaagaggatgagcctccaagtcgagcagactcgatcgaacactcatcaaggatatcatcgagcacataaacagc |
111 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| | |||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30484712 |
ggcgaaacatgatgttctttggtttgaaagaggtaaatcctctgagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagc |
30484811 |
T |
|
| Q |
112 |
atctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgatgtgaactaagttgtctgat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
30484812 |
atctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaacagctttgatgtgaactaagttgtctgat |
30484911 |
T |
|
| Q |
212 |
agcttttgagcctttgatttgattcc |
237 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
30484912 |
agcttttgagcctttgacttgattcc |
30484937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 12 - 237
Target Start/End: Complemental strand, 30712223 - 30711998
Alignment:
| Q |
12 |
ggcgaaacatgatgttctttgggttgaaagaggatgagcctccaagtcgagcagactcgatcgaacactcatcaaggatatcatcgagcacataaacagc |
111 |
Q |
| |
|
|||||||||||||||||||| | |||||||||| | |||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30712223 |
ggcgaaacatgatgttctttagtttgaaagaggtaaatcctctcagtcgaaaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagc |
30712124 |
T |
|
| Q |
112 |
atctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgatgtgaactaagttgtctgat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
30712123 |
atctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaacagccttgatgtgaactaagttgtctgat |
30712024 |
T |
|
| Q |
212 |
agcttttgagcctttgatttgattcc |
237 |
Q |
| |
|
||||||||| |||||||||||||||| |
|
|
| T |
30712023 |
agcttttgaacctttgatttgattcc |
30711998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 2 - 237
Target Start/End: Complemental strand, 30337330 - 30337095
Alignment:
| Q |
2 |
ccgatctgacggcgaaacatgatgttctttgggttgaaagaggatgagcctccaagtcgagcagactcgatcgaacactcatcaaggatatcatcgagca |
101 |
Q |
| |
|
||||||| | |||||||| ||||||||||||| |||||||||| | |||| |||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30337330 |
ccgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagca |
30337231 |
T |
|
| Q |
102 |
cataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgatgtgaactaa |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30337230 |
cataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaacagccttgatgtgaactaa |
30337131 |
T |
|
| Q |
202 |
gttgtctgatagcttttgagcctttgatttgattcc |
237 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||| |
|
|
| T |
30337130 |
gttgtctgatagcttttgagcctttgacttaattcc |
30337095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 30750957 - 30751182
Alignment:
| Q |
12 |
ggcgaaacatgatgttctttgggttgaaagaggatgagcctccaagtcgagcagactcgatcgaacactcatcaaggatatcatcgagcacataaacagc |
111 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| | |||| |||||| ||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30750957 |
ggcgaaacatgatgttctttggtttgaaagaggtacatcctctcagtcgacaagacttaatcgagtactcatcaaggatatcatcgagcacataaacagc |
30751056 |
T |
|
| Q |
112 |
atctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgatgtgaactaagttgtctgat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
30751057 |
atctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaacagccttgatgcgaactaagttgtctgat |
30751156 |
T |
|
| Q |
212 |
agcttttgagcctttgatttgattcc |
237 |
Q |
| |
|
||||||||||||||||| || ||||| |
|
|
| T |
30751157 |
agcttttgagcctttgacttaattcc |
30751182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 30061683 - 30061908
Alignment:
| Q |
12 |
ggcgaaacatgatgttctttgggttgaaagaggatgagcctccaagtcgagcagactcgatcgaacactcatcaaggatatcatcgagcacataaacagc |
111 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| | |||| |||||| ||||| |||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
30061683 |
ggcgaaacatgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagcacataaacacc |
30061782 |
T |
|
| Q |
112 |
atctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgatgtgaactaagttgtctgat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
30061783 |
atctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaacagccttgatgtgaactaagttgtttgat |
30061882 |
T |
|
| Q |
212 |
agcttttgagcctttgatttgattcc |
237 |
Q |
| |
|
||||||||| ||||||| || ||||| |
|
|
| T |
30061883 |
agcttttgaacctttgacttaattcc |
30061908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 30401377 - 30401613
Alignment:
| Q |
1 |
gccgatctgacggcgaaacatgatgttctttgggttgaaagaggatgagcctccaagtcgagcagactcgatcgaacactcatcaaggatatcatcgagc |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30401377 |
gccgatctgacggcgaaacacgatgttctttgggttgaaagagaatgagcctccaagtcgagcagactcgatcgaacactcatcaaggatatcatcgagc |
30401476 |
T |
|
| Q |
101 |
acataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgatgtgaacta |
200 |
Q |
| |
|
|||||||||||||||||||| | ||| | ||||| ||||||| || ||||||| |||| |||||||||||||| |||||| ||||| ||||||| || |
|
|
| T |
30401477 |
acataaacagcatctttgagttgttggagccataccttaatatagctgtctttgacttgtctcttctcagcatctacaagaacagcctcgatgtgattta |
30401576 |
T |
|
| Q |
201 |
agttgtctgatagcttttgagcctttgatttgattcc |
237 |
Q |
| |
|
|| | |||||| |||| |||||||| |||||||| |
|
|
| T |
30401577 |
aggaggttgataggtttttggcctttgacttgattcc |
30401613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 29854611 - 29854846
Alignment:
| Q |
1 |
gccgatctgacggcgaaacatgatgttctttgggttgaaagaggatgagcctccaagtcgagcagactcgatcgaacactcatcaaggatatcatcgagc |
100 |
Q |
| |
|
|||||||| | |||||||||||||||||||||| |||||||||| | | |||| |||| || |||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
29854611 |
gccgatctcatggcgaaacatgatgttctttggtttgaaagaggttaatcctctaagttgaccagacttgattgaacactcatcaaggatatcatcgagc |
29854710 |
T |
|
| Q |
101 |
acataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgatgtgaacta |
200 |
Q |
| |
|
|||||||||||||||||||| | ||||| ||||| |||||||||| | ||| ||| ||||||||| |||||||||||||||| ||| ||||| | ||| |
|
|
| T |
29854711 |
acataaacagcatctttgagttgttgtagccataccttaatagagtggtctgtgacttgtttcttttcagcatcttcaagaacagcattgatcaaatcta |
29854810 |
T |
|
| Q |
201 |
agttgtctgatagcttttgagcctttgatttgattc |
236 |
Q |
| |
|
|| || |||||| |||| ||||||||| ||||||| |
|
|
| T |
29854811 |
aggtggttgatagtttttcagcctttgacttgattc |
29854846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 29873474 - 29873707
Alignment:
| Q |
1 |
gccgatctgacggcgaaacatgatgttctttgggttgaaagaggatgagcctccaagtcgagcagactcgatcgaacactcatcaaggatatcatcgagc |
100 |
Q |
| |
|
|||||||| | |||||||||||||||| ||||| || |||||| ||| |||| |||| || |||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
29873474 |
gccgatctcaaggcgaaacatgatgttatttggtttaaaagagattgatcctctaagttgaccagacttgatcgagcactcatcaaggatatcatcgagc |
29873573 |
T |
|
| Q |
101 |
acataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgatgtgaacta |
200 |
Q |
| |
|
||||||||| |||||||||| | ||||| ||||| |||||||||| | ||| ||| ||||||||| |||||||||||||||| ||||||||| | ||| |
|
|
| T |
29873574 |
acataaacaacatctttgagttgttgtagccataccttaatagagcggtctgtgacttgtttcttttcagcatcttcaagaacagccttgatcaaatcta |
29873673 |
T |
|
| Q |
201 |
agttgtctgatagcttttgagcctttgatttgat |
234 |
Q |
| |
|
|| || |||||| |||| ||||||||| ||||| |
|
|
| T |
29873674 |
aggtggttgatagtttttcagcctttgacttgat |
29873707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 64 - 237
Target Start/End: Original strand, 30437161 - 30437334
Alignment:
| Q |
64 |
agactcgatcgaacactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttc |
163 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||| || ||||||| |||| || |
|
|
| T |
30437161 |
agacttgatcgaacactcatcaaggatgtcatcgagcacataaacagcatctttgaggtcttgtagccataccttaatgaagttgtctttgacttgtctc |
30437260 |
T |
|
| Q |
164 |
ttctcagcatcttcaagaatagccttgatgtgaactaagttgtctgatagcttttgagcctttgatttgattcc |
237 |
Q |
| |
|
|| |||||||||||||||| ||||||||||| ||||||| || |||||| |||| ||||||||| |||||||| |
|
|
| T |
30437261 |
ttttcagcatcttcaagaacagccttgatgtcaactaaggtggttgataggttttcagcctttgacttgattcc |
30437334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 17417474 - 17417283
Alignment:
| Q |
1 |
gccgatctgacggcgaaacatgatgttctttgggttgaaagaggatgagcctccaagtcgagcagactcgatcgaacactcatcaaggatatcatcgagc |
100 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||| |||||| |||||||||||| ||| ||| |||||||||| || ||||||||||| |||||||| ||| |
|
|
| T |
17417474 |
gccgatctcacggcgaaatatgatgttctttggtttgaaataggatgagcctctaagccgaccagactcgattgagcactcatcaagaatatcatctagc |
17417375 |
T |
|
| Q |
101 |
acataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgat |
192 |
Q |
| |
|
||||||||| |||||||||| | ||| | ||||| ||| ||||| | ||| ||| |||||| | ||||||||||||||||| ||||||||| |
|
|
| T |
17417374 |
acataaacaacatctttgagttgttgaagccataccttgttagagcgatctgtgacttgtttatgctcagcatcttcaagaacagccttgat |
17417283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 191
Target Start/End: Original strand, 30207841 - 30208012
Alignment:
| Q |
20 |
atgatgttctttgggttgaaagaggatgagcctccaagtcgagcagactcgatcgaacactcatcaaggatatcatcgagcacataaacagcatctttga |
119 |
Q |
| |
|
|||||||||||||| |||||||| |||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30207841 |
atgatgttctttggtttgaaagatgatgaggcaataagtcgagcagactcgatcgagcactcatcaaggatatcatcgagcacataaacagcatctttga |
30207940 |
T |
|
| Q |
120 |
ggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaatagccttga |
191 |
Q |
| |
|
| | ||||| ||||| ||| |||||| | | ||| ||| |||| ||||||||||||||||| ||| |||| |
|
|
| T |
30207941 |
gttgttgtagccatacctttatagagcgattgatgacttgcttctgctcagcatcttcaagaacagcgttga |
30208012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 64 - 237
Target Start/End: Complemental strand, 30241136 - 30240963
Alignment:
| Q |
64 |
agactcgatcgaacactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttc |
163 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||| | ||| | ||||| |||||||||| ||| ||| ||||||| |
|
|
| T |
30241136 |
agacttgatcgagcactcatcaaggatatcatcgagcacataaacaacatctttgagttgttgcagccataccttaatagagcagtctgtgacttgtttc |
30241037 |
T |
|
| Q |
164 |
ttctcagcatcttcaagaatagccttgatgtgaactaagttgtctgatagcttttgagcctttgatttgattcc |
237 |
Q |
| |
|
||||||||||||||||||| || ||||| | ||||| ||||||| ||||||||||||||||| |||||||| |
|
|
| T |
30241036 |
ttctcagcatcttcaagaacggctttgatcatatctaaggtgtctgacagcttttgagcctttgacttgattcc |
30240963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 222
Target Start/End: Complemental strand, 30329625 - 30329426
Alignment:
| Q |
23 |
atgttctttgggttgaaagaggatgagcctccaagtcgagcagactcgatcgaacactcatcaaggatatcatcgagcacataaacagcatctttgaggt |
122 |
Q |
| |
|
||||||||||| ||||||||||||||||||| || |||| ||||||||||| | |||||||||||||||||||| |||||||| | | ||||||||| | |
|
|
| T |
30329625 |
atgttctttggtttgaaagaggatgagcctctaattcgaccagactcgatcaagcactcatcaaggatatcatcaagcacatatatatcatctttgattt |
30329526 |
T |
|
| Q |
123 |
cttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgatgtgaactaagttgtctgatagcttttgagc |
222 |
Q |
| |
|
||| | ||||| |||||||||| | ||| || ||| || | |||| |||||||||||| | ||||||| || ||||| || ||||||||||||||| |
|
|
| T |
30329525 |
gttgaagccatatcttaatagagcggtctgagacttgcttatgctcaacatcttcaagaacaaccttgataagatctaaggtggttgatagcttttgagc |
30329426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 30476675 - 30476911
Alignment:
| Q |
1 |
gccgatctgacggcgaaacatgatgttctttgggttgaaagaggatgagcctccaagtcgagcagactcgatcgaacactcatcaaggatatcatcgagc |
100 |
Q |
| |
|
|||||| | ||||||||||| ||||||||| |||||||| |||| ||| || ||||| | ||| || || ||||| |||||||| |||||||| ||| |
|
|
| T |
30476675 |
gccgatgtcacggcgaaacacaatgttctttaggttgaaacaggacgaggctttaagtctactagattcaatggaacattcatcaagaatatcatcaagc |
30476774 |
T |
|
| Q |
101 |
acataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgatgtgaacta |
200 |
Q |
| |
|
||||| |||||||||||||| | ||| | ||||| |||||||||| | ||| ||| ||||||| ||||||||||||||||| ||||||||| || | | |
|
|
| T |
30476775 |
acatatacagcatctttgagttgttggagccataccttaatagagcggtctgtgacctgtttctgctcagcatcttcaagaacagccttgatcagatcca |
30476874 |
T |
|
| Q |
201 |
agttgtctgatagcttttgagcctttgatttgattcc |
237 |
Q |
| |
|
|| || ||| | ||||| |||||||||| ||||||| |
|
|
| T |
30476875 |
aggtggttgacaacttttcagcctttgatgtgattcc |
30476911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 237
Target Start/End: Complemental strand, 30520358 - 30520195
Alignment:
| Q |
74 |
gaacactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcat |
173 |
Q |
| |
|
|||||||||||||| |||||||| || | || | ||||||||||| | ||| | ||||| ||| |||||| | ||| | | ||||||||||||||||| |
|
|
| T |
30520358 |
gaacactcatcaagaatatcatctagtatgtagattgcatctttgagttgttgaagccatacctttatagagcggtctgttatttgtttcttctcagcat |
30520259 |
T |
|
| Q |
174 |
cttcaagaatagccttgatgtgaactaagttgtctgatagcttttgagcctttgatttgattcc |
237 |
Q |
| |
|
||||||||| |||||||| | ||||| || |||||||||| ||||||| || |||||||| |
|
|
| T |
30520258 |
cttcaagaacggccttgatcaaatctaaggtggttgatagctttagagccttggacttgattcc |
30520195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 237
Target Start/End: Complemental strand, 30560698 - 30560535
Alignment:
| Q |
74 |
gaacactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcat |
173 |
Q |
| |
|
|||||||||||||| |||||||| || | || | ||||||||||| | ||| | ||||| ||| |||||| | ||| | | ||||||||||||||||| |
|
|
| T |
30560698 |
gaacactcatcaagaatatcatctagtatgtagattgcatctttgagttgttgaagccatacctttatagagcggtctgttatttgtttcttctcagcat |
30560599 |
T |
|
| Q |
174 |
cttcaagaatagccttgatgtgaactaagttgtctgatagcttttgagcctttgatttgattcc |
237 |
Q |
| |
|
||||||||| |||||||| | ||||| || |||||||||| ||||||| || |||||||| |
|
|
| T |
30560598 |
cttcaagaacggccttgatcaaatctaaggtggttgatagctttagagccttggacttgattcc |
30560535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 192
Target Start/End: Original strand, 16415393 - 16415432
Alignment:
| Q |
153 |
tgaattgtttcttctcagcatcttcaagaatagccttgat |
192 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
16415393 |
tgaattgtttctcctcagcatcttcaagagtagccttgat |
16415432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 2 - 237
Target Start/End: Complemental strand, 20295387 - 20295152
Alignment:
| Q |
2 |
ccgatctgacggcgaaacatgatgttctttgggttgaaagaggatgagcctccaagtcgagcagactcgatcgaacactcatcaaggatatcatcgagca |
101 |
Q |
| |
|
||||||| | |||||||| ||||||| |||| ||||||||| | |||| |||||| ||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
20295387 |
ccgatctcatggcgaaacgcgatgttcattggtttgaaagagttaaatcctctcagtcgaccagactcgatcgagtactcatcaaggatatcaccgagca |
20295288 |
T |
|
| Q |
102 |
cataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgatgtgaactaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
20295287 |
cataaacagcatctttgaggtcttgtaaccattgcttaatagagagttctttgaattgtttcttctcagcatcttcaagaacagccttgatgtgaactaa |
20295188 |
T |
|
| Q |
202 |
gttgtctgatagcttttgagcctttgatttgattcc |
237 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||| |
|
|
| T |
20295187 |
gttgtctgatagctttcgagcctttgacctgattcc |
20295152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 235
Target Start/End: Original strand, 52353330 - 52353495
Alignment:
| Q |
70 |
gatcgaacactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctca |
169 |
Q |
| |
|
||||||||| |||||||||||||||||||| || ||||||||||||||||| | || | ||||| ||||||||| | ||| ||| |||||||| |||| |
|
|
| T |
52353330 |
gatcgaacattcatcaaggatatcatcgagaacgtaaacagcatctttgagttgctgaagccatactttaatagagcggtctgtgacttgtttctgctca |
52353429 |
T |
|
| Q |
170 |
gcatcttcaagaatagccttgatgtgaactaagttgtctgatagcttttgagcctttgatttgatt |
235 |
Q |
| |
|
||||||||||||| ||||||||| || |||| ||| ||| || |||| ||| ||||| |||||| |
|
|
| T |
52353430 |
gcatcttcaagaactgccttgatgagatctaacgtgtttgacaggttttcagcttttgacttgatt |
52353495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 15 - 188
Target Start/End: Complemental strand, 25292739 - 25292566
Alignment:
| Q |
15 |
gaaacatgatgttctttgggttgaaagaggatgagcctccaagtcgagcagactcgatcgaacactcatcaaggatatcatcgagcacataaacagcatc |
114 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| ||||||| ||| | |||| | ||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
25292739 |
gaaacatgatgttctttggtttgaaagaggatgagcctctaagtcgactagatttgatcaatcactcatcaaggatatcatcgagcacatatacaacatc |
25292640 |
T |
|
| Q |
115 |
tttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaatagcct |
188 |
Q |
| |
|
|||||| | ||||| ||||| |||||||||| | ||| ||| |||||||| ||||||||||||||||| ||||| |
|
|
| T |
25292639 |
tttgagttgttgtagccataccttaatagagcgatctgtgacttgtttctgctcagcatcttcaagaacagcct |
25292566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 64 - 237
Target Start/End: Original strand, 26708680 - 26708853
Alignment:
| Q |
64 |
agactcgatcgaacactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttc |
163 |
Q |
| |
|
||||| |||||| || ||||||||||| |||||||||||||| ||| |||||||||||||||||| ||||| ||||||| || ||| ||| |||| || |
|
|
| T |
26708680 |
agacttgatcgagcattcatcaaggatgtcatcgagcacatatacaacatctttgaggtcttgtagccataccttaataaagttgtctgtgacttgtctc |
26708779 |
T |
|
| Q |
164 |
ttctcagcatcttcaagaatagccttgatgtgaactaagttgtctgatagcttttgagcctttgatttgattcc |
237 |
Q |
| |
|
||||||||||||||||||| ||| | |||| ||||||| || |||||| |||| ||||||||| |||||||| |
|
|
| T |
26708780 |
ttctcagcatcttcaagaacggccctaatgtcaactaaggtggttgataggttttcagcctttgacttgattcc |
26708853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 237
Target Start/End: Complemental strand, 7580460 - 7580298
Alignment:
| Q |
75 |
aacactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatc |
174 |
Q |
| |
|
|||||||||||||||||||||| |||||||| || ||||||||||| | || ||||||| | |||||| | || | ||||| ||||| ||||| || |
|
|
| T |
7580460 |
aacactcatcaaggatatcatcaagcacatacaccgcatctttgagttgctgcaaccatatttgaatagatcggtcagttaattgcttcttttcagcgtc |
7580361 |
T |
|
| Q |
175 |
ttcaagaatagccttgatgtgaactaagttgtctgatagcttttgagcctttgatttgattcc |
237 |
Q |
| |
|
|| ||||| ||||||||| | ||||| | ||||||||||||||||||||| |||||||| |
|
|
| T |
7580360 |
ttgaagaacagccttgatcagttctaaggttcttgatagcttttgagcctttgacttgattcc |
7580298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 237
Target Start/End: Original strand, 7100779 - 7100942
Alignment:
| Q |
74 |
gaacactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcat |
173 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| || ||||||||||| | || | ||||| | ||||||| | ||| | ||||| ||||| ||||| | |
|
|
| T |
7100779 |
gaacattcatcaaggatatcatcaagcacatacaccgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgt |
7100878 |
T |
|
| Q |
174 |
cttcaagaatagccttgatgtgaactaagttgtctgatagcttttgagcctttgatttgattcc |
237 |
Q |
| |
|
||||||||| |||||| || | ||||| || |||||| |||| ||||||||| |||||||| |
|
|
| T |
7100879 |
cttcaagaacagccttaataagttctaaggtggttgatagtttttcagcctttgacttgattcc |
7100942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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