View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9836_low_77 (Length: 235)
Name: NF9836_low_77
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_low_77 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 14 - 213
Target Start/End: Original strand, 7802019 - 7802218
Alignment:
| Q |
14 |
caaaggtgtaagtatagttggtccttccctggaattgttttgagtgttggagttataagtgctgctaaagttgaccctgttgttgctttggttaaagata |
113 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7802019 |
caaaggtgtaagtgtagttggtccttccctggaattgttttgagtgttggagttataagtgctgctaaagttgaccctgttgttgctttggttaaagata |
7802118 |
T |
|
| Q |
114 |
tcatcaagggtactgaatatattatnnnnnnntaaaataaattagaatctatgaatgtctaagtgggattttatgcaaattttatggctagtgttgtgga |
213 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7802119 |
tcattaagggtactgaatatattataaaaaaataaaataaattagaatctatgaatgtctaagtgggattttatgcaaattttatggctagtgttgtgga |
7802218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University