View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9836_low_80 (Length: 233)
Name: NF9836_low_80
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_low_80 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 42538204 - 42538007
Alignment:
| Q |
26 |
cctcagccacatcctcaagtctttaccccaacacacatttcacaaaccatgaatgtctcccacttttacaagactcatatgataacttcatcaaatcatt |
125 |
Q |
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| T |
42538204 |
cctcagccacatcttcaagtctttaccccaacacacatttcacaaaccatgaatctctcccacttttacaagactcatataataacttcatcaaatcatt |
42538105 |
T |
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| Q |
126 |
ccctcaattttccacaacttctcaagtagatcaaattcgagatcaagaatatcaacacttgaataatctctccaatacatgttttgattacacaggtt |
223 |
Q |
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| T |
42538104 |
ccctcaattttccacaacttctcaagtagatcaaattcgagatcaagaatatcaacacttgaataatctctccaatacatgttttgattacactggtt |
42538007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 108 - 191
Target Start/End: Complemental strand, 42531448 - 42531365
Alignment:
| Q |
108 |
taacttcatcaaatcattccctcaattttccacaacttctcaagtagatcaaattcgagatcaagaatatcaacacttgaataa |
191 |
Q |
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|||||| || |||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||| ||||||||||| |
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| T |
42531448 |
taactttataaaatcattccctcaattttccacaacttctgaaatagatcaaattcgagcacaagaatatcaccacttgaataa |
42531365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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