View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9836_low_81 (Length: 230)
Name: NF9836_low_81
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_low_81 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 6 - 230
Target Start/End: Original strand, 38979720 - 38979943
Alignment:
| Q |
6 |
aaaatatacataaaaatagtttgtaacataccaattaattaattctttcacttttgtccaaggaaccctagaagaacaagatatcaattcttggttttat |
105 |
Q |
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| T |
38979720 |
aaaatatacataaaaatagtttgtaacataccaattaattaattctttcacttttgtccaaggaaccctagaagaacaagatatcaattcttggttttat |
38979819 |
T |
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| Q |
106 |
caaagaaattaacaaagtcacaaagttcnnnnnnnnnccttggatctgcaaagcacaaaggttgttgaattgttgaagtaaagttaagctatattttatt |
205 |
Q |
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| T |
38979820 |
caaagaaattaacaaagtcacaaagttc-aaaaacaaccttggatctgcaaagcacaaaggttgttgtattgttgaagtaaagttaagctatattttatt |
38979918 |
T |
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| Q |
206 |
ttcatggattcaattcaagaattta |
230 |
Q |
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| T |
38979919 |
ttcatggattcaattcaagaattta |
38979943 |
T |
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