View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9836_low_86 (Length: 219)
Name: NF9836_low_86
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_low_86 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 33095337 - 33095133
Alignment:
| Q |
14 |
catagggaggttgattaggtgagggaggagtacttttgggaggtgtataaggagtatttggaggactatagattggagaaggagtttttggtggtattat |
113 |
Q |
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| T |
33095337 |
catagggaggttgattaggtgagggaggagtacttttgggaggtgtataaggagtattaggaggactatagattggagaaggagtttttggtggtattat |
33095238 |
T |
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| Q |
114 |
tggtacatatggtggttgatttccaggagaaggttctttcggaggagtataaggaacattaggaggattgataataggagaaggtgtctttggtggtgtt |
213 |
Q |
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| T |
33095237 |
tggtacatatggtggttgattttcaggagaaggtgttttcggaggagtataaggaacattaggaggattgataataggagaaggtgtctttggtggtgtt |
33095138 |
T |
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| Q |
214 |
attgg |
218 |
Q |
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||||| |
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| T |
33095137 |
attgg |
33095133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 88 - 212
Target Start/End: Complemental strand, 33095467 - 33095343
Alignment:
| Q |
88 |
ggagaaggagtttttggtggtattattggtacatatggtggttgatttccaggagaaggttctttcggaggagtataaggaacattaggaggattgataa |
187 |
Q |
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| T |
33095467 |
ggagaaggagtttttggtggtgtaattggtacataaggtggttgattgcgaggagatggtgtttttggaggagtataaggaacatttggaggattgtaaa |
33095368 |
T |
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| Q |
188 |
taggagaaggtgtctttggtggtgt |
212 |
Q |
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| T |
33095367 |
taggtgaaggagtttttggaggtgt |
33095343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 88 - 210
Target Start/End: Complemental strand, 33095161 - 33095039
Alignment:
| Q |
88 |
ggagaaggagtttttggtggtattattggtacatatggtggttgatttccaggagaaggttctttcggaggagtataaggaacattaggaggattgataa |
187 |
Q |
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| T |
33095161 |
ggagaaggtgtctttggtggtgttattggcacatatggtggttgatttccaggagaaggtacctttggaggagtatagggaacattgggaggactatgaa |
33095062 |
T |
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| Q |
188 |
taggagaaggtgtctttggtggt |
210 |
Q |
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|||| |||||||| || |||||| |
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| T |
33095061 |
taggtgaaggtgttttaggtggt |
33095039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 33095501 - 33095439
Alignment:
| Q |
156 |
aggagtataaggaacattaggaggattgataataggagaaggtgtctttggtggtgttattgg |
218 |
Q |
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| T |
33095501 |
aggagtatatggaacattaggaggagtgtgaataggagaaggagtttttggtggtgtaattgg |
33095439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 134
Target Start/End: Complemental strand, 33103765 - 33103722
Alignment:
| Q |
91 |
gaaggagtttttggtggtattattggtacatatggtggttgatt |
134 |
Q |
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| T |
33103765 |
gaaggagtttttggtggtgtaattggcacatatggtggttgatt |
33103722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 33103858 - 33103812
Alignment:
| Q |
88 |
ggagaaggagtttttggtggtattattggtacatatggtggttgatt |
134 |
Q |
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||||||||||||||||||||| | ||||| ||||| ||||||||||| |
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| T |
33103858 |
ggagaaggagtttttggtggtgtaattggaacataaggtggttgatt |
33103812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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