View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9836_low_87 (Length: 219)

Name: NF9836_low_87
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9836_low_87
NF9836_low_87
[»] chr7 (7 HSPs)
chr7 (1-219)||(31170173-31170391)
chr7 (5-219)||(31151884-31152109)
chr7 (51-92)||(9489802-9489843)
chr7 (50-93)||(16537554-16537597)
chr7 (50-93)||(16628065-16628108)
chr7 (51-97)||(32984242-32984288)
chr7 (44-92)||(35501194-35501242)
[»] chr4 (10 HSPs)
chr4 (15-96)||(50442730-50442811)
chr4 (26-92)||(17221820-17221886)
chr4 (54-93)||(55238748-55238787)
chr4 (51-93)||(4590249-4590291)
chr4 (54-96)||(46582634-46582676)
chr4 (42-87)||(921495-921540)
chr4 (54-94)||(627010-627050)
chr4 (50-90)||(922272-922312)
chr4 (49-93)||(6460095-6460139)
chr4 (54-98)||(39697890-39697934)
[»] chr3 (4 HSPs)
chr3 (14-93)||(37920979-37921059)
chr3 (53-87)||(9219781-9219815)
chr3 (54-96)||(48251572-48251614)
chr3 (54-95)||(36741172-36741213)
[»] chr6 (7 HSPs)
chr6 (54-93)||(12032-12071)
chr6 (51-97)||(28957105-28957151)
chr6 (50-93)||(14552337-14552380)
chr6 (54-96)||(14945535-14945577)
chr6 (14-94)||(14049865-14049946)
chr6 (51-96)||(20584073-20584118)
chr6 (54-90)||(13698598-13698634)
[»] chr8 (4 HSPs)
chr8 (54-96)||(10030412-10030454)
chr8 (14-92)||(989558-989637)
chr8 (54-96)||(23435261-23435303)
chr8 (54-87)||(44260217-44260250)
[»] chr2 (5 HSPs)
chr2 (15-94)||(36547217-36547297)
chr2 (48-93)||(13490725-13490770)
chr2 (49-93)||(9459074-9459118)
chr2 (53-93)||(15625344-15625384)
chr2 (46-90)||(31147305-31147349)
[»] chr1 (7 HSPs)
chr1 (61-93)||(34656430-34656462)
chr1 (54-93)||(2352593-2352632)
chr1 (47-80)||(20414827-20414860)
chr1 (58-87)||(33843227-33843256)
chr1 (58-87)||(33950723-33950752)
chr1 (44-93)||(41974761-41974810)
chr1 (50-90)||(30433526-30433566)
[»] chr5 (9 HSPs)
chr5 (54-93)||(1469728-1469767)
chr5 (15-93)||(11017176-11017255)
chr5 (39-93)||(20370137-20370191)
chr5 (49-95)||(37339777-37339823)
chr5 (25-93)||(40361577-40361646)
chr5 (14-93)||(27679498-27679578)
chr5 (53-93)||(28391652-28391692)
chr5 (54-90)||(32389662-32389698)
chr5 (64-92)||(33037302-33037330)
[»] scaffold0045 (2 HSPs)
scaffold0045 (44-93)||(63862-63911)
scaffold0045 (44-93)||(71194-71243)


Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 31170173 - 31170391
Alignment:
Q  1 ccagcagcagcagtttttcttggtggtgtccggaattggaacccaaactttgtatatattatgcaatatctctatcaactgagctaaactcacaggatac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31170173 ccagcagcagcagtttttcttggtggtgtccggaattggaacccagactttgtatatattatgcaatatctctatcaactgagctaaactcacagaatac 31170272  T
Q  101 cagcagtagttgattacatacattacattcttaaagatagtagcaaataaaatattattaattttttccacttgctctccccttccaaagtagttatata 200  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31170273 cagcagcagttgattacatacattacattcttaaagatagtagcaaatcaaatattattaattttttccacttgctctccccttccaaagtagttatata 31170372  T
Q  201 tgaagaaaaaattaacttt 219  Q
    |||||||||||||||||||    
T  31170373 tgaagaaaaaattaacttt 31170391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 5 - 219
Target Start/End: Original strand, 31151884 - 31152109
Alignment:
Q  5 cagcagcagtttttcttggtggtgtccggaattggaacccaaactttgtatatattatgcaatatctctatcaactgagctaaactcacaggatac---- 100  Q
    |||||||||||||| |||||||||||||||||| |||||||||| ||| ||||||||| ||||||||||||||||||| |||||||||||| ||||        
T  31151884 cagcagcagtttttattggtggtgtccggaattcgaacccaaaccttgcatatattatacaatatctctatcaactgaactaaactcacagaatacgagc 31151983  T
Q  101 -------cagcagtagttgattacatacattacattcttaaagatagtagcaaataaaatattattaattttttccacttgctctccccttccaaagtag 193  Q
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31151984 agcatgccagcagcagttgattacatacattacattcttaaagatagtagcaaataaaatattattaattttttccacttgctctccccttccaaagtag 31152083  T
Q  194 ttatatatgaagaaaaaattaacttt 219  Q
    ||||||||||||||||||||||||||    
T  31152084 ttatatatgaagaaaaaattaacttt 31152109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 9489802 - 9489843
Alignment:
Q  51 tgtatatattatgcaatatctctatcaactgagctaaactca 92  Q
    |||||||| |||| ||||||||||||||||||||||||||||    
T  9489802 tgtatataatatgtaatatctctatcaactgagctaaactca 9489843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 93
Target Start/End: Original strand, 16537554 - 16537597
Alignment:
Q  50 ttgtatatattatgcaatatctctatcaactgagctaaactcac 93  Q
    |||||||||||||||| |||| ||| ||||||||||||||||||    
T  16537554 ttgtatatattatgcattatccctaccaactgagctaaactcac 16537597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 93
Target Start/End: Complemental strand, 16628108 - 16628065
Alignment:
Q  50 ttgtatatattatgcaatatctctatcaactgagctaaactcac 93  Q
    |||||||||||||||| |||| ||| ||||||||||||||||||    
T  16628108 ttgtatatattatgcattatccctaccaactgagctaaactcac 16628065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 32984242 - 32984288
Alignment:
Q  51 tgtatatattatgcaatatctctatcaactgagctaaactcacagga 97  Q
    |||||||| ||||||||||| ||| |||||||||||| |||||||||    
T  32984242 tgtatataatatgcaatatccctaccaactgagctaagctcacagga 32984288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 35501242 - 35501194
Alignment:
Q  44 caaactttgtatatattatgcaatatctctatcaactgagctaaactca 92  Q
    |||||||| |||||| ||||| ||||||||||||| |||| ||||||||    
T  35501242 caaactttatatataatatgcgatatctctatcaaatgagttaaactca 35501194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 50442730 - 50442811
Alignment:
Q  15 ttttcttggtggtgtccggaattggaacccaaactttgtatatattatgcaatatctctatcaactgagctaaactcacagg 96  Q
    |||| ||||||||||| || ||| ||||||| || ||| |||||||||||| |||| ||| |||||||||||| ||||||||    
T  50442730 tttttttggtggtgtctgggattcgaacccagaccttgcatatattatgcattatccctaccaactgagctaagctcacagg 50442811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 17221820 - 17221886
Alignment:
Q  26 gtgtccggaattggaacccaaactt-tgtatatattatgcaatatctctatcaactgagctaaactca 92  Q
    |||||||| |||| ||||| ||||| |||||||| ||| ||||||||||| |||||||||||||||||    
T  17221820 gtgtccgggattg-aaccccaacttctgtatataatatacaatatctctaccaactgagctaaactca 17221886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 93
Target Start/End: Original strand, 55238748 - 55238787
Alignment:
Q  54 atatattatgcaatatctctatcaactgagctaaactcac 93  Q
    |||||||||||||||||||||| ||||||| |||||||||    
T  55238748 atatattatgcaatatctctattaactgagttaaactcac 55238787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 93
Target Start/End: Complemental strand, 4590291 - 4590249
Alignment:
Q  51 tgtatatattatgcaatatctctatcaactgagctaaactcac 93  Q
    |||||||| ||||||||||| ||| ||||||||||||||||||    
T  4590291 tgtatataatatgcaatatccctaccaactgagctaaactcac 4590249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 46582676 - 46582634
Alignment:
Q  54 atatattatgcaatatctctatcaactgagctaaactcacagg 96  Q
    ||||| ||||||||||| ||| |||||||||||||||||||||    
T  46582676 atataatatgcaatatccctaccaactgagctaaactcacagg 46582634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 921495 - 921540
Alignment:
Q  42 cccaaactttgtatatattatgcaatatctctatcaactgagctaa 87  Q
    ||||||||||  ||||| |||||| |||||||||||||||||||||    
T  921495 cccaaactttacatataatatgcattatctctatcaactgagctaa 921540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 627010 - 627050
Alignment:
Q  54 atatattatgcaatatctctatcaactgagctaaactcaca 94  Q
    ||||| ||||||||||| ||| |||||||||||||||||||    
T  627010 atataatatgcaatatccctaccaactgagctaaactcaca 627050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 90
Target Start/End: Original strand, 922272 - 922312
Alignment:
Q  50 ttgtatatattatgcaatatctctatcaactgagctaaact 90  Q
    ||||||||| ||||||||| ||||| |||||||||||||||    
T  922272 ttgtatataatatgcaatacctctaccaactgagctaaact 922312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 6460095 - 6460139
Alignment:
Q  49 tttgtatatattatgcaatatctctatcaactgagctaaactcac 93  Q
    ||||||||||||||||| | ||||||| ||||||| |||||||||    
T  6460095 tttgtatatattatgcattgtctctattaactgagttaaactcac 6460139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 39697890 - 39697934
Alignment:
Q  54 atatattatgcaatatctctatcaactgagctaaactcacaggat 98  Q
    ||||| ||||||||||| |||||||||||||||| ||||| ||||    
T  39697890 atataatatgcaatatccctatcaactgagctaagctcacgggat 39697934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 37920979 - 37921059
Alignment:
Q  14 tttttcttggtggtgtccggaattggaacc-caaactttgtatatattatgcaatatctctatcaactgagctaaactcac 93  Q
    ||||| || ||||||||||| ||| ||||| || || ||| |||||||||||| |||| ||||||||||||||||||||||    
T  37920979 tttttttttgtggtgtccgggatttgaaccgcagacattgcatatattatgcattatccctatcaactgagctaaactcac 37921059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 9219815 - 9219781
Alignment:
Q  53 tatatattatgcaatatctctatcaactgagctaa 87  Q
    |||||||||| ||||||||||||||||||||||||    
T  9219815 tatatattatacaatatctctatcaactgagctaa 9219781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 48251614 - 48251572
Alignment:
Q  54 atatattatgcaatatctctatcaactgagctaaactcacagg 96  Q
    ||||| ||||||||||| |||||||||||||||| ||||||||    
T  48251614 atataatatgcaatatccctatcaactgagctaagctcacagg 48251572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 36741213 - 36741172
Alignment:
Q  54 atatattatgcaatatctctatcaactgagctaaactcacag 95  Q
    |||||||||| |||||||||||||||||| |||| |||||||    
T  36741213 atatattatgtaatatctctatcaactgaactaatctcacag 36741172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 93
Target Start/End: Original strand, 12032 - 12071
Alignment:
Q  54 atatattatgcaatatctctatcaactgagctaaactcac 93  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  12032 atatattatgcattatctctatcaactgagctaaactcac 12071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 97
Target Start/End: Complemental strand, 28957151 - 28957105
Alignment:
Q  51 tgtatatattatgcaatatctctatcaactgagctaaactcacagga 97  Q
    ||||||||||||||||| ||| ||||||||||| |||||||||||||    
T  28957151 tgtatatattatgcaatgtctttatcaactgagttaaactcacagga 28957105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 93
Target Start/End: Complemental strand, 14552380 - 14552337
Alignment:
Q  50 ttgtatatattatgcaatatctctatcaactgagctaaactcac 93  Q
    |||||||||||||||| ||||||||||||||||| ||| |||||    
T  14552380 ttgtatatattatgcattatctctatcaactgagttaagctcac 14552337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 14945535 - 14945577
Alignment:
Q  54 atatattatgcaatatctctatcaactgagctaaactcacagg 96  Q
    |||||||||||| | ||||||||||||||||||| ||||||||    
T  14945535 atatattatgcactgtctctatcaactgagctaagctcacagg 14945577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 14049865 - 14049946
Alignment:
Q  14 tttttcttggtggtgtccggaattggaacc-caaactttgtatatattatgcaatatctctatcaactgagctaaactcaca 94  Q
    ||||| ||||||||| |||||||| ||||| || || ||| |||||||||||| | |||| |||||||||||| | ||||||    
T  14049865 ttttttttggtggtggccggaatttgaacctcagaccttgcatatattatgcattgtctcaatcaactgagcttagctcaca 14049946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 20584118 - 20584073
Alignment:
Q  51 tgtatatattatgcaatatctctatcaactgagctaaactcacagg 96  Q
    |||||||| ||||||||||| |||||||||||| ||| ||||||||    
T  20584118 tgtatataatatgcaatatcgctatcaactgagttaagctcacagg 20584073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 13698634 - 13698598
Alignment:
Q  54 atatattatgcaatatctctatcaactgagctaaact 90  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  13698634 atataatatgcaatatctctatcaattgagctaaact 13698598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 10030454 - 10030412
Alignment:
Q  54 atatattatgcaatatctctatcaactgagctaaactcacagg 96  Q
    ||||| ||||||||||||||| |||||||||||||||||||||    
T  10030454 atataatatgcaatatctctaccaactgagctaaactcacagg 10030412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 989558 - 989637
Alignment:
Q  14 tttttcttggtggtgtccggaattggaaccc-aaactttgtatatattatgcaatatctctatcaactgagctaaactca 92  Q
    ||||| |||||||||||||||||| |||||| | || ||| |||||||| ||| |||| ||| |||||||| ||||||||    
T  989558 ttttttttggtggtgtccggaatttgaaccctagacattgcatatattaggcattatccctaccaactgagttaaactca 989637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 23435261 - 23435303
Alignment:
Q  54 atatattatgcaatatctctatcaactgagctaaactcacagg 96  Q
    ||||| ||||||||||| |||||||||||||||| ||||||||    
T  23435261 atataatatgcaatatccctatcaactgagctaagctcacagg 23435303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 44260217 - 44260250
Alignment:
Q  54 atatattatgcaatatctctatcaactgagctaa 87  Q
    ||||| ||||||||||||||||||||||||||||    
T  44260217 atataatatgcaatatctctatcaactgagctaa 44260250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 36547217 - 36547297
Alignment:
Q  15 ttttcttggtggtgtccggaattggaacc-caaactttgtatatattatgcaatatctctatcaactgagctaaactcaca 94  Q
    |||| |||||||||| ||||||| ||||| ||||||||| ||||||||| || ||||  || |||||||||||| ||||||    
T  36547217 tttttttggtggtgtgcggaattcgaacctcaaactttgcatatattatacattatccttaccaactgagctaagctcaca 36547297  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 93
Target Start/End: Complemental strand, 13490770 - 13490725
Alignment:
Q  48 ctttgtatatattatgcaatatctctatcaactgagctaaactcac 93  Q
    ||||| ||||||||| || | |||||||||||||||||||||||||    
T  13490770 ctttgcatatattatacattgtctctatcaactgagctaaactcac 13490725  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 9459074 - 9459118
Alignment:
Q  49 tttgtatatattatgcaatatctctatcaactgagctaaactcac 93  Q
    ||||||||||||||||| | ||| ||||||||||||||| |||||    
T  9459074 tttgtatatattatgcattgtctttatcaactgagctaagctcac 9459118  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 15625344 - 15625384
Alignment:
Q  53 tatatattatgcaatatctctatcaactgagctaaactcac 93  Q
    ||||||||||||||| || ||||||| ||||||||||||||    
T  15625344 tatatattatgcaatgtccctatcaattgagctaaactcac 15625384  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 31147305 - 31147349
Alignment:
Q  46 aactttgtatatattatgcaatatctctatcaactgagctaaact 90  Q
    |||||| |||||||||| || |||||||||||||| |||||||||    
T  31147305 aactttatatatattatacattatctctatcaactaagctaaact 31147349  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 93
Target Start/End: Original strand, 34656430 - 34656462
Alignment:
Q  61 atgcaatatctctatcaactgagctaaactcac 93  Q
    |||||||||||||||||||||||||||||||||    
T  34656430 atgcaatatctctatcaactgagctaaactcac 34656462  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 93
Target Start/End: Original strand, 2352593 - 2352632
Alignment:
Q  54 atatattatgcaatatctctatcaactgagctaaactcac 93  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  2352593 atataatatgcaatatctctatcaactgagctaagctcac 2352632  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 80
Target Start/End: Original strand, 20414827 - 20414860
Alignment:
Q  47 actttgtatatattatgcaatatctctatcaact 80  Q
    ||||||||||||||||||||||||||||| ||||    
T  20414827 actttgtatatattatgcaatatctctattaact 20414860  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 87
Target Start/End: Original strand, 33843227 - 33843256
Alignment:
Q  58 attatgcaatatctctatcaactgagctaa 87  Q
    ||||||||||||||||||||||||||||||    
T  33843227 attatgcaatatctctatcaactgagctaa 33843256  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 87
Target Start/End: Complemental strand, 33950752 - 33950723
Alignment:
Q  58 attatgcaatatctctatcaactgagctaa 87  Q
    ||||||||||||||||||||||||||||||    
T  33950752 attatgcaatatctctatcaactgagctaa 33950723  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 41974810 - 41974761
Alignment:
Q  44 caaactttgtatatattatgcaatatctctatcaactgagctaaactcac 93  Q
    ||||| ||| |||||||||||| |||| ||||||||||| ||||||||||    
T  41974810 caaaccttgcatatattatgcattatccctatcaactgaactaaactcac 41974761  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 90
Target Start/End: Original strand, 30433526 - 30433566
Alignment:
Q  50 ttgtatatattatgcaatatctctatcaactgagctaaact 90  Q
    |||||||||||||| | ||||||||||||||||| ||||||    
T  30433526 ttgtatatattatgtattatctctatcaactgagttaaact 30433566  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 93
Target Start/End: Complemental strand, 1469767 - 1469728
Alignment:
Q  54 atatattatgcaatatctctatcaactgagctaaactcac 93  Q
    ||||| ||||||||||||||| ||||||||||||||||||    
T  1469767 atataatatgcaatatctctaccaactgagctaaactcac 1469728  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 11017255 - 11017176
Alignment:
Q  15 ttttcttggtggtgtccggaattggaacc-caaactttgtatatattatgcaatatctctatcaactgagctaaactcac 93  Q
    |||| |||| ||||||||| ||| ||||| || || ||| |||||||||||| |||| ||| ||||||||||||||||||    
T  11017255 tttttttggcggtgtccgggattcgaacctcagaccttgcatatattatgcattatccctaccaactgagctaaactcac 11017176  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 20370137 - 20370191
Alignment:
Q  39 gaacccaaactttgtatatattatgcaatatctctatcaactgagctaaactcac 93  Q
    |||| ||||| |||||||||||||||| |||| ||| |||||||||||| |||||    
T  20370137 gaactcaaaccttgtatatattatgcattatccctaccaactgagctaagctcac 20370191  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 95
Target Start/End: Original strand, 37339777 - 37339823
Alignment:
Q  49 tttgtatatattatgcaatatctctatcaactgagctaaactcacag 95  Q
    ||||||||||||||||| | ||| ||||||||||||| |||||||||    
T  37339777 tttgtatatattatgcattgtctttatcaactgagcttaactcacag 37339823  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 40361577 - 40361646
Alignment:
Q  25 ggtgtccggaattggaacccaaact-ttgtatatattatgcaatatctctatcaactgagctaaactcac 93  Q
    |||||||||| || |||||| |||  ||| ||||| ||||||||||| ||| ||||||||||||||||||    
T  40361577 ggtgtccggagttcgaaccccaacccttgcatataatatgcaatatccctaccaactgagctaaactcac 40361646  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 27679578 - 27679498
Alignment:
Q  14 tttttcttggtggtgtccggaattggaaccca-aactttgtatatattatgcaatatctctatcaactgagctaaactcac 93  Q
    ||||| || ||||||||||| ||| ||||||  ||| ||| |||||||||||| ||||| || |||||||||||| |||||    
T  27679578 tttttttttgtggtgtccgggatttgaaccccgaaccttgcatatattatgcattatctttaccaactgagctaagctcac 27679498  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 28391652 - 28391692
Alignment:
Q  53 tatatattatgcaatatctctatcaactgagctaaactcac 93  Q
    |||||||||| || ||| |||||||||||||||||||||||    
T  28391652 tatatattatacattatttctatcaactgagctaaactcac 28391692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 32389662 - 32389698
Alignment:
Q  54 atatattatgcaatatctctatcaactgagctaaact 90  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  32389662 atataatatgcaatatctctaccaactgagctaaact 32389698  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 92
Target Start/End: Original strand, 33037302 - 33037330
Alignment:
Q  64 caatatctctatcaactgagctaaactca 92  Q
    |||||||||||||||||||||||||||||    
T  33037302 caatatctctatcaactgagctaaactca 33037330  T

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Target: scaffold0045 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 63911 - 63862
Alignment:
Q  44 caaactttgtatatattatgcaatatctctatcaactgagctaaactcac 93  Q
    ||||||||||||||||||| || | || ||| ||||||||||||||||||    
T  63911 caaactttgtatatattatacattgtccctaccaactgagctaaactcac 63862  T

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Target: scaffold0045; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 71243 - 71194
Alignment:
Q  44 caaactttgtatatattatgcaatatctctatcaactgagctaaactcac 93  Q
    ||||||||||||||||||| || | || ||| ||||||||||||||||||    
T  71243 caaactttgtatatattatacattgtccctaccaactgagctaaactcac 71194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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