View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9836_low_9 (Length: 514)
Name: NF9836_low_9
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_low_9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 21 - 514
Target Start/End: Original strand, 36532940 - 36533433
Alignment:
| Q |
21 |
gaggttcgatccctgaaaccccacttattccactacttgaccaaataaaagtgatactgatggtcaaattacaatcttctcgaatgggatttaaacttcg |
120 |
Q |
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| T |
36532940 |
gaggttcgatccctggaaccccacttattctactacttgatcaaataaaagtgatactgatggtcaaattacaattgtctcgaatgggatttaaacttcg |
36533039 |
T |
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| Q |
121 |
taccttgaggttacgaggtttaattcttaccacttagctgacacttcatggatgcgtaaagtaattagtttagtgtaatttttaaaacaactaactttat |
220 |
Q |
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| T |
36533040 |
taccttgaggttacgaagtttgattcttaccacttagctgacacttcatggatgcgtaaagtaattagtttagtgtaatttttaaaacaactaactttat |
36533139 |
T |
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| Q |
221 |
tttaatgtcaattattgttagttcaagtaagaatgttacttgacttttatactttatccaattctagtaatataacaaccactatatcatacatgcattg |
320 |
Q |
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| T |
36533140 |
tttaatgtcaattattgttagttcaagtaagaatgttacttgacttttatactttatccaattctagtaatataacaaccactatatcatacatgcattg |
36533239 |
T |
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| Q |
321 |
acatatatattatatagttgaggacaatgtcattgtgaaacttgtgaaacttttttgctcttttggaattggttaagctttgatgggtttcactgttggg |
420 |
Q |
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| T |
36533240 |
acatatatattatatagttgaggacaatgtcattgtgaaacttgtgaaacttttttgctcttttggaattggttaagctttgatgggtttcactgttggg |
36533339 |
T |
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| Q |
421 |
ttggtaagaaatgtcttctcaagaaatcatgttggttctcatgaaagaaaagtaagtcctcaatttctattgcttctccctttgcttctcctct |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||| |
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| T |
36533340 |
ttggtaagaaatgtcttctcaagaaatcatgttggttctcatgaaagaaaagtaagtcctcaatttctattgcttctctctttgtttcttctct |
36533433 |
T |
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