View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9837_low_1 (Length: 833)
Name: NF9837_low_1
Description: NF9837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9837_low_1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 753; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 753; E-Value: 0
Query Start/End: Original strand, 1 - 815
Target Start/End: Original strand, 47074686 - 47075514
Alignment:
| Q |
1 |
gcagagatcaaatccaaaatataacacaaattcgatttcagggaccaatgaataccttctcttgtccattgcgtgttgatcgcatgacaaaatttgcgcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47074686 |
gcagagatcaaatccaaaatataacacaaattcgatttcagggaccaatgaataccttctcttgtccattgcgtgtggatcgcatgacaaaatttgcgcc |
47074785 |
T |
|
| Q |
101 |
ttttctctcttggtatagcttttcaaggtctgctactgatttttgcagtttactgttgccaacaaacattgatgtcactattttgcatcta--------- |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47074786 |
ttttctctcttggtatagcttttcaaggtctgctactgatttttgcagtttactgttgccaacaaacattgatgtcactattttgcatctataaagtatg |
47074885 |
T |
|
| Q |
192 |
-----gaaagtgtaaagcctaaagaagtttaggctaaacaaaaagctatataatttgacattaccctataagtacatgatttccactgctattgaaatca |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
47074886 |
aactagaaagtgtaaagcctaaagaagtttaggctaaacaaaaagctatataatttgacattaccctataagtgcatgatttccactgctattgaaatca |
47074985 |
T |
|
| Q |
287 |
aaacactcaataagtaacggattatcctgcatagagaaagaaattnnnnnnntgtcagagtaatctatatatgaatatgatgtaacatcagacatgttgc |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47074986 |
aaacactcaataagtaacggattatcctgcatagagaaagaaattaaaaaaatgtcagagtaatctatatatgaatatgatgtaacatcagacatgttgc |
47075085 |
T |
|
| Q |
387 |
aaataaagatggaaagcttactttacttccaaactgctggaaattaagacaaagtggtctccattttggatttaaattgttgtctttaacttcagtcttg |
486 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47075086 |
aaataaagatggaaagcttactttacttccaaactgctggaaattaagacaaagtggtctccattttggatttaaattgttgtctttaacttcagtcttg |
47075185 |
T |
|
| Q |
487 |
caaataggaacagaacctccactctcaacaattcttgatatccttagaaaaggatcctacaagaaaaagcaagatgagttttaagaatgtaataaataaa |
586 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47075186 |
caaataggaacagaacctccactctcaacaattcttgatatccttagaaaaggatcctacaagaaaaagcaagatgagttttaagaatgtaataaataaa |
47075285 |
T |
|
| Q |
587 |
acggatatgatggagcttggtattgaatatttacacttttagataaaatgtctttgttatccaagtgagaacaacggaagataatctcaacagcactcct |
686 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47075286 |
acggatatgatggagcttggtattgaatatttacacttttagataaaatgtctttgttatccaagtgagaacaacggaagataatctcaacagcactcct |
47075385 |
T |
|
| Q |
687 |
tgcagcaacagtctcctcagcatgaatggtaattgccccttgttttctttgaccactaatccctcttttgttttgaagctttacagttaagctccggctt |
786 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47075386 |
tgcagcaacagtctcctcagcatgaatggtaattgccccttgttttctttgaccactaatccctcttttgttttgaagctttacagttaagctccggctt |
47075485 |
T |
|
| Q |
787 |
ggtttggtcactatctgttaaccacatca |
815 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
47075486 |
ggtttggtcactatctgttaaccacatca |
47075514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 361 - 554
Target Start/End: Original strand, 47057258 - 47057452
Alignment:
| Q |
361 |
atatgatgtaacatcagacatgttgcaaataaagatggaaagcttactttacttccaaactgctggaaattaagacaaagtggtctccattttggattta |
460 |
Q |
| |
|
||||||| |||||| |||||||||| |||||| | ||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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|
| T |
47057258 |
atatgatttaacattagacatgttgtgttcaaagatcgcaagcttactatacttccaaactgctggaaattaagacaaactggtttccattttggattta |
47057357 |
T |
|
| Q |
461 |
aatt-gttgtctttaacttcagtcttgcaaataggaacagaacctccactctcaacaattcttgatatccttagaaaaggatcctacaagaaaaa |
554 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
47057358 |
aatttgttgtctataacttcagtcttgcaaataggaacagaacctccactctcaaccattcttgatatccttagaaaaggatcctacaagaaaaa |
47057452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 605 - 805
Target Start/End: Original strand, 47057666 - 47057866
Alignment:
| Q |
605 |
ggtattgaatatttacacttttagataaaatgtctttgttatccaagtgagaacaacggaagataatctcaacagcactccttgcagcaacagtctcctc |
704 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| || |
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|
| T |
47057666 |
ggtattgaatatgtacacttttagaaaaaatgtctttgttatccaagcgagaacaacggaagataatctcaacagcactccttgaagcaacagtctcttc |
47057765 |
T |
|
| Q |
705 |
agcatgaatggtaattgccccttgttttctttgaccactaatcc-ctcttttgttttgaagctttacagttaagctccggcttggtttggtcactatctg |
803 |
Q |
| |
|
|||| |||||||||| || | |||||| || || | |||| || | | | |||||||||||| |||||||| ||||||||||||||||||||||| |
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|
| T |
47057766 |
agcaagaatggtaataattccaagatttcttcgaaca-tgatcctctttgtagctttgaagctttaaggttaagcttcggcttggtttggtcactatctg |
47057864 |
T |
|
| Q |
804 |
tt |
805 |
Q |
| |
|
|| |
|
|
| T |
47057865 |
tt |
47057866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 46 - 179
Target Start/End: Original strand, 47056763 - 47056896
Alignment:
| Q |
46 |
caatgaataccttctcttgtccattgcgtgttgatcgcatgacaaaatttgcgccttttctctcttggtatagcttttcaaggtctgctactgatttttg |
145 |
Q |
| |
|
||||||| |||||||||||||| |||||| | ||| ||||||||||||| | ||||||||||| | | ||||||||||||||||||||| || ||| || |
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|
| T |
47056763 |
caatgaacaccttctcttgtcctttgcgtttggatggcatgacaaaattcacaccttttctctcattgcatagcttttcaaggtctgctattgttttctg |
47056862 |
T |
|
| Q |
146 |
cagtttactgttgccaacaaacattgatgtcact |
179 |
Q |
| |
|
|| ||||||| || |||||||| ||||||||||| |
|
|
| T |
47056863 |
cattttactgatggcaacaaactttgatgtcact |
47056896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 235 - 321
Target Start/End: Original strand, 47056945 - 47057031
Alignment:
| Q |
235 |
tataatttgacattaccctataagtacatgatttccactgctattgaaatcaaaacactcaataagtaacggattatcctgcataga |
321 |
Q |
| |
|
|||||||||||||||||| || ||||||||||| || ||| ||||||||||||||||||| |||| ||| ||| ||||||||||||| |
|
|
| T |
47056945 |
tataatttgacattacccgattagtacatgattgccgctgatattgaaatcaaaacactcgataactaatggagtatcctgcataga |
47057031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 34 - 554
Target Start/End: Complemental strand, 18230687 - 18230146
Alignment:
| Q |
34 |
gatttcagggaccaatgaataccttctcttgtccattgcgtgttgatcgcatgacaaaatttgcgccttttctctcttggtatagcttttcaaggtctgc |
133 |
Q |
| |
|
|||| |||||| ||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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|
| T |
18230687 |
gattgcagggatcaatgaacaccttctcttgtccattgcgtgtggatggcatgacaaaatttgcgccttttttttcttggtatagcttttcaaggtctgc |
18230588 |
T |
|
| Q |
134 |
tactgatttttgcagtttactgttgccaacaaacattgatgtcactattttgcatcta------------------gaaagtgtaaagcctaaagaagtt |
215 |
Q |
| |
|
||||||||||| ||||||||||| | |||||||| ||||||||| ||||||||||||| |||||||||||||||||| | ||| |
|
|
| T |
18230587 |
tactgattttttcagtttactgtcggcaacaaactttgatgtcagtattttgcatctatatatagtatatggactagaaagtgtaaagcctaaaaatgtt |
18230488 |
T |
|
| Q |
216 |
taggctaaacaaaaag----ctatataatttgacattaccctataagtacatgatttccactgctattgaaatcaaaacactcaataagtaacggattat |
311 |
Q |
| |
|
|||||||||| |||| | ||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| || ||| ||| |
|
|
| T |
18230487 |
taggctaaacgaaaataaaacaatataatttgacattacccgataagtacatgattgccgctgctattgaaatcaaaacactcaataagcaatggagtat |
18230388 |
T |
|
| Q |
312 |
cctgcatagagaaagaaattnnnnnnntgtcagagtaatctatatatgaatatgatgtaacatcagacatgttgcaaataaagatggaaagcttacttta |
411 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||| | |||||| |||||||||||||| |
|
|
| T |
18230387 |
cctgcatagagaaagaaattaaaaaa-tgtcagagtaatctatatatgaatatggtgtaacatcggacatgttgtgcacaaagatcgaaagcttacttta |
18230289 |
T |
|
| Q |
412 |
cttccaaactgctggaaattaagacaaagtggtctccattttggatttaaattgttgtctttaacttcagtcttgcaaataggaacagaacctccactct |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
18230288 |
cttccaaactgctggaaattaagacaaagtggtctccattttggatttaaattgttgtctataacttcagtcttgaaaataggaacagttcctccactct |
18230189 |
T |
|
| Q |
512 |
caacaattcttgatatccttagaaaaggatcctacaagaaaaa |
554 |
Q |
| |
|
|||| | || ||||||||||||||||||||||| ||||||||| |
|
|
| T |
18230188 |
caaccactcgtgatatccttagaaaaggatcctgcaagaaaaa |
18230146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 591 - 805
Target Start/End: Complemental strand, 18230076 - 18229862
Alignment:
| Q |
591 |
atatgatggagcttggtattgaatatttacacttttagataaaatgtctttgttatccaagtgagaacaacggaagataatctcaacagcactccttgca |
690 |
Q |
| |
|
|||||||| |||| |||||||||||| |||||||||||| |||||||||||||||||||||||||| || ||||||||||| ||||||||| || ||||| |
|
|
| T |
18230076 |
atatgatgaagctaggtattgaatatgtacacttttagaaaaaatgtctttgttatccaagtgagagcagcggaagataatatcaacagcattctttgca |
18229977 |
T |
|
| Q |
691 |
gcaacagtctcctcagcatgaatggtaattgccccttgttttctttgaccactaatccctcttttgttttgaagctttacagttaagctccggcttggtt |
790 |
Q |
| |
|
||||| || |||||||| |||||||||||||||||||| ||| |||||| | || |||||| ||||||||||||| ||| |||||||||| |||| ||| |
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|
| T |
18229976 |
gcaactgtttcctcagcgtgaatggtaattgccccttgatttatttgactaatattccctcctttgttttgaagccttatggttaagctcctgctttgtt |
18229877 |
T |
|
| Q |
791 |
tggtcactatctgtt |
805 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
18229876 |
tggtcacaatctgtt |
18229862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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