View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9837_low_10 (Length: 338)
Name: NF9837_low_10
Description: NF9837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9837_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 12 - 281
Target Start/End: Complemental strand, 2354277 - 2353997
Alignment:
| Q |
12 |
ttggatattgaaccaaatttctgacaccagcagaagggagcaagtggcacgatgatatgcttgaacatgatactactttttatggcactagctcaaagaa |
111 |
Q |
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| T |
2354277 |
ttggatattgaaccaaatttctgacaccagcagaagggagcaagtggcacgatgatatgcttgaacatgatactactttttatggcactagctcaaagaa |
2354178 |
T |
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| Q |
112 |
aagcagaaattcttagtagcatggcatatgaatatttcattttgtggaccattctaggctgggagt---------ttttcatgtttctcagaaggtgga- |
201 |
Q |
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| T |
2354177 |
aagcagaaattcttagtagcatggcatatgaatatttcattttgtggaccatgctaggctgggagttcatgagtgttttcatgtttctcagaaggtggat |
2354078 |
T |
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| Q |
202 |
agctaacttatatataatttttaaaaatgg-annnnnnnnnnaatgacaagagcaatatcttttcttatatacaagataca |
281 |
Q |
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| T |
2354077 |
ggctaacttatatataatttttaaaaatggaaaaaaaaaattaatgacaagagcaatatctttttttatatacaagataca |
2353997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 288 - 323
Target Start/End: Complemental strand, 2353959 - 2353924
Alignment:
| Q |
288 |
agaagatctttgaacttaacaaacgattacaaagat |
323 |
Q |
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| T |
2353959 |
agaagatcttcgaacttaacaaacgattacaaagat |
2353924 |
T |
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