View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9837_low_12 (Length: 280)
Name: NF9837_low_12
Description: NF9837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9837_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 48183626 - 48183890
Alignment:
| Q |
1 |
cgtataaatataaaatatattatactttggatttaattcatatacaccgtcggtataaagattttttgtacaatcaattaaaatcgtcagatcataaaaa |
100 |
Q |
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| T |
48183626 |
cgtataaatataaaatatattatactttggatttaattcatatacactgtcggcataaagattttttgcacaatcaattaaaatcgtcagatcataaaaa |
48183725 |
T |
|
| Q |
101 |
cgtttgaaagtaaacatgactacttctaaagtcacacatgattaattgtaacttactgagatgtaaaacttttacacgtagcgtatcaaaattaaagtct |
200 |
Q |
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| T |
48183726 |
cgtttgaaagtcaacatgactacttctaaagtcacacatgattaattgtaacttactgagatgtaaaacttttacacatagcgtatcaaaattaaagtct |
48183825 |
T |
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| Q |
201 |
tatactttatgttcgatttgattaatccaggtgatcaaagaggcaatgagattttacattgtatc |
265 |
Q |
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| T |
48183826 |
tatacttaatgatcgatttgattaatccaggtgatcaaagaggcaatgagattttacattgtatc |
48183890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 38093789 - 38093863
Alignment:
| Q |
26 |
tttggatttaattcatatacaccgtcggtataaagattttttgtacaatcaattaaaatcgtcagatcataaaaa |
100 |
Q |
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| T |
38093789 |
tttggatttaattaatatacaaagtcggtgtaaatattttttatacaatcaatcaaaattgtcaaatcattaaaa |
38093863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 5376305 - 5376363
Alignment:
| Q |
83 |
atcgtcagatcat-aaaaacgtttgaaagtaaacatgactacttctaaagtcacacatg |
140 |
Q |
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| T |
5376305 |
atcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcgcacatg |
5376363 |
T |
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