View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9837_low_13 (Length: 267)
Name: NF9837_low_13
Description: NF9837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9837_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 35802276 - 35802022
Alignment:
| Q |
1 |
aaaaatctatgtatgattctcattttaacattgacaacacaagggacattcgtcttgattatgctcttttcacacctcctaccgtgttggtgattgatgg |
100 |
Q |
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| T |
35802276 |
aaaaatctatgtatgattctcattttaacattgacaacacaagggacattcgtcttgattatgctcttttcacacctcctaccgtgttggtgattgatgg |
35802177 |
T |
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| Q |
101 |
ttatgataaccttttttatgctgctgtggttgctgtttattcagcattggaaaaagtaggtggaaggtcatttaacttagttgtataa-----gagagtg |
195 |
Q |
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| T |
35802176 |
ttatgataaccttttttatgctgttgtggatgctgtttattcagcattggaaaaagtaggtggaaggtcatttaacttagttgtataagagaagagagtg |
35802077 |
T |
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| Q |
196 |
gttggccttcatctgacgggacagtaacttcacctgataatgcaatgctagaact |
250 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35802076 |
gttggccttcatctgacgggacagtaacttcacctgataatgcaatgctagaact |
35802022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 241
Target Start/End: Complemental strand, 35765525 - 35765423
Alignment:
| Q |
142 |
cagcattggaaaaagtaggtggaaggtcatttaacttagttgtata---agagagtggttggccttcatctgacgggacagtaacttcacctgataatgc |
238 |
Q |
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|||||||||| ||||||||| | |||| || ||| |||||||||| | | |||||||| ||||||||| |||||||||||||||| ||||||||| |
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| T |
35765525 |
cagcattggagcaagtaggtgtagggtctttgaacatagttgtatattaacatagtggttgctcttcatctggtgggacagtaacttcacttgataatgc |
35765426 |
T |
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| Q |
239 |
aat |
241 |
Q |
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||| |
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| T |
35765425 |
aat |
35765423 |
T |
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