View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9837_low_16 (Length: 248)
Name: NF9837_low_16
Description: NF9837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9837_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 55364539 - 55364480
Alignment:
| Q |
22 |
tgctaaaacagaacagaacggatttgtgttaaaaatcaggtgagatttatatgaatgttt |
81 |
Q |
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| T |
55364539 |
tgctaaaacagaacagaacggatttgtgttaaaaatcaggtgagatttatatgaatgttt |
55364480 |
T |
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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 55364400 - 55364337
Alignment:
| Q |
166 |
gtgttgtgttgggaggaagcaatagaaagaaatgagaaagacgaagaagagcagcaacaacaacagtagt |
235 |
Q |
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| T |
55364400 |
gtgttgtgttgggaggaagcaa------gaaatgagaaagacgaagaagagcagcaacaacaacagtagt |
55364337 |
T |
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