View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9837_low_18 (Length: 233)
Name: NF9837_low_18
Description: NF9837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9837_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 4600384 - 4600185
Alignment:
| Q |
17 |
aaggattctgcagcccgtatattatgtaagtattgtgtcacatattttcattcaaaaaataataaattgatgatagagcattatgacannnnnnnatcca |
116 |
Q |
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| T |
4600384 |
aaggattctgcagcccatatattatgtaagtattgtgtcacatattctcattcaaaaaataataaattgatgatagagcattatgacatttttttatcca |
4600285 |
T |
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| Q |
117 |
catggttgatcc-tcttagtggtataaggtttgattgtttaatttctacgtgcagaaatgattttaaggactttgtggagatatgcttccaagaatttgg |
215 |
Q |
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| T |
4600284 |
tatagttgatccctcttagtgatataaggtttgattgtttaatttctacgtgcagaaatgattttaaggactttgtggagatatgcttccaagaatttgg |
4600185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 4624502 - 4624433
Alignment:
| Q |
146 |
ttgattgtttaatttctacgtgcagaaatgattttaaggactttgtggagatatgcttccaagaatttgg |
215 |
Q |
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| T |
4624502 |
ttgattgtttaatttctatatgcagaaaagattttaaggactttgtggatatatgcttcaaggaatttgg |
4624433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 4624561 - 4624525
Alignment:
| Q |
64 |
tcattcaaaaaataataaattgatgatagagcattat |
100 |
Q |
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| T |
4624561 |
tcattcaagaaataataaattgaggatagagcattat |
4624525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 18804057 - 18804128
Alignment:
| Q |
144 |
gtttgattgtttaatttctacgtgcagaaatgattttaaggactttgtggagatatgcttccaagaatttgg |
215 |
Q |
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| T |
18804057 |
gtttaattgtttaatttctacatgcagagatgatttcaagagctttgtggaggtatgcttcgaggaatttgg |
18804128 |
T |
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