View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9837_low_2 (Length: 600)
Name: NF9837_low_2
Description: NF9837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9837_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 18 - 590
Target Start/End: Complemental strand, 27548748 - 27548180
Alignment:
| Q |
18 |
aaaccctgttctaacatgcatctcacttctttatattttcctacgaatacatcacataagcttcaatacttcccnnnnnnnncttctgagaaactcagta |
117 |
Q |
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| T |
27548748 |
aaaccctgttctaacatgcatctcacttctttatattttcctacgaatacatcacataagcttcaacacttccttttttcttcttctgagaaactcagta |
27548649 |
T |
|
| Q |
118 |
tccagaaatcacatactattacaactaaatcaagttaatctagctgaactcattaaacgaagataaagctctcctagtacctatcttttctattcactca |
217 |
Q |
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|||||||||||||||||||| ||||||||||| ||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
27548648 |
tccagaaatcacatactattgcaactaaatcatgttaatctagctgaactcatttaaagaagataaagctctcctggtacctatcttttctattcactcg |
27548549 |
T |
|
| Q |
218 |
aatccagcgtccttcataaggaaaatcaaacttcttacaacttggatgaacaaataagcattcattcatactaaagttctgttattttgttaattatatt |
317 |
Q |
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|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||| |||||||||||||||||| |
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| T |
27548548 |
aatccagcatccttcataaggaaaatcaaacttcttacgacttggatgaacaaataagcattgat----actaaagttctgatattttgttaattatatt |
27548453 |
T |
|
| Q |
318 |
cccaagaataaaacctaggactgaccatgtgcttaagagactacccttctaccctattaagtcaaatgccaaaggcaggacccataccaacaatatctct |
417 |
Q |
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|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
27548452 |
tccaagaattaaacctaggaccgaccatgtgcttaagagactacccttctaccctattaagtcaaatgccaaaggcaggacccataccaacaatattttt |
27548353 |
T |
|
| Q |
418 |
ctcatacgaattgatccaagaattaaacctaggaccggccacgtgcttaagagaacccatccccttgtacttgcacagatacatgtcagtacactcccag |
517 |
Q |
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|||||||| | |||||||||||||||||||||||||| ||| |||||||||||| || ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
27548352 |
ctcatacgcaatgatccaagaattaaacctaggaccgaccatgtgcttaagagatccgatccccttgtacttgcacaaatacatgtcagtacactcccag |
27548253 |
T |
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| Q |
518 |
ttccttttatattcataaaatccccacttcaaacaaggaaaggatctctgatattcaaaattcatagttcatc |
590 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27548252 |
ttccttttatattcataaaatccccacttcaaacaaggaaaggatctctgatattcaaaattcatagttcatc |
27548180 |
T |
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