View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9837_low_22 (Length: 202)
Name: NF9837_low_22
Description: NF9837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9837_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 2e-66; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 20 - 172
Target Start/End: Original strand, 2482815 - 2482967
Alignment:
| Q |
20 |
agaaccaggtcagtttgaaatcacggttttgttctcaaattttaaaccatgtcggttcagaaacnnnnnnngacatggtgcatcaaaccacacaatctgt |
119 |
Q |
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| T |
2482815 |
agaaccaggtcagtttgaaatcacggttttgttctcaaattttaaaccatgtcggttcagaaacaaaaaaaaacatggtgcatcaaaccacacaatctgt |
2482914 |
T |
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| Q |
120 |
ttgaattgggttgaacctcaacatgttgcacaaatgaaattaattgattgttc |
172 |
Q |
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| T |
2482915 |
ttgaattgggttgaacctcaacatgttgcacaaatgaaattaattgattgttc |
2482967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 7440163 - 7440017
Alignment:
| Q |
25 |
caggtcagtttgaaatcacggttttgttctcaaattttaaaccatgtcggttcagaaacnnnnnnngacatggtgcatcaaaccacacaatctgtttgaa |
124 |
Q |
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| T |
7440163 |
caggtcagtttgaaatcacagttctgttctcgaattttaaaccacgtcggttcagaaacaaaaaaat-catggtgcatcaaaccacacaatctgtttgaa |
7440065 |
T |
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| Q |
125 |
ttgggttgaacctcaacatgttgcacaaatgaaattaattgattgttc |
172 |
Q |
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| T |
7440064 |
ttgggttgaacctcaacatggtgcacaaatgaaattaattgattgttc |
7440017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 29 - 172
Target Start/End: Original strand, 2493376 - 2493514
Alignment:
| Q |
29 |
tcagtttgaaatcacggttttgttctcaaattttaaaccatgtcggttcagaaacnnnnnnngacatggtgcatcaaaccacacaatctgtttgaattgg |
128 |
Q |
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| T |
2493376 |
tcagtttgaaatcacagttttgttctcaaattttaaacaatatcagttcataaacaaaag----catggtgcatcaaacctca-aatcagtctgaattgg |
2493470 |
T |
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| Q |
129 |
gttgaacctcaacatgttgcacaaatgaaattaattgattgttc |
172 |
Q |
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| T |
2493471 |
gttgaatctcaacatgttgcacagatgacattaattgtttgttc |
2493514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 9565233 - 9565173
Alignment:
| Q |
22 |
aaccaggtcagtttgaaatcacggttttgttctcaaattttaaaccatgtcggttcagaaa |
82 |
Q |
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| T |
9565233 |
aaccagctcagtttgaaatcacaattttgttctcgaattttaaaccacatcggtttagaaa |
9565173 |
T |
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