View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9837_low_3 (Length: 570)
Name: NF9837_low_3
Description: NF9837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9837_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 18 - 560
Target Start/End: Complemental strand, 49620865 - 49620323
Alignment:
| Q |
18 |
aggaagtacttaaatcctaccaagaacttgtcatttgattaatcttaattggagcttaaagctcaagttatcacccaacaacttagcaactatagttacc |
117 |
Q |
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| T |
49620865 |
aggaagtacttaaatcctaccaagaacttgtcatttgattaatcttaattggagcttaaagctcaagttgtcacccaacaacttagcaactatagttacc |
49620766 |
T |
|
| Q |
118 |
gactgacagtaccctcatcctgannnnnnnnatctcaatttgatatatgatgcgtcgtagatatttatctaaagttttttcttctacaaggaattatttt |
217 |
Q |
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| T |
49620765 |
gactgacagtaccctcatcctgattttttttatctcaatttgatatatgatgcgtcgtagatatttatctaaagttttttcttctacaaggaattatttt |
49620666 |
T |
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| Q |
218 |
taactcaagatatgttcaaaatacaaaaattgtgtaaagatgcaaaagtacattggaaaaatatatataaacaacccagttcttgcttgacaattgttct |
317 |
Q |
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| T |
49620665 |
taactcaagatatgtacaaaatacaaaaattgtgtaaagatgcaaaagtacattggaaaaatatatataaacaacccagtttttgcttgacaattgttct |
49620566 |
T |
|
| Q |
318 |
ttaggcacccaagaaatccaaagagtagttaactactgcttgagaacactttctaaatcaggtgaaccgatttaaaaagagccaaatggcagttaactgt |
417 |
Q |
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| T |
49620565 |
ttaggcacccaagaaatccgaagagtagttaactactgcttgagaacactttctaaatcaggtgaaccgatttaaaaagagccagatggcagttaactgc |
49620466 |
T |
|
| Q |
418 |
tgtttgatttgtgtatgagagtaatcattgtgtgcctaaagagcaattgtcgcaaagttttatttggcaacacgatcaagttgnnnnnnnatttggcaag |
517 |
Q |
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| T |
49620465 |
tgtttgatttgtgtatgagagtaatcattgtgtgcctaaagagcaattgtcgcaaagttttatttggcaacatgatcaagttgtttttttatttggcaag |
49620366 |
T |
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| Q |
518 |
ttacaggattggtacgtgtataatctctcaaatctcgtctctg |
560 |
Q |
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| T |
49620365 |
ttacaggattggtacgtgtataatctctcaaatctcgtctctg |
49620323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 361 - 393
Target Start/End: Original strand, 27682205 - 27682237
Alignment:
| Q |
361 |
gaacactttctaaatcaggtgaaccgatttaaa |
393 |
Q |
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| T |
27682205 |
gaacactttttaaatcaggtgaaccgatttaaa |
27682237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 360 - 396
Target Start/End: Complemental strand, 47903685 - 47903649
Alignment:
| Q |
360 |
agaacactttctaaatcaggtgaaccgatttaaaaag |
396 |
Q |
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| T |
47903685 |
agaacactttttaaatcagatgaaccgatttaaaaag |
47903649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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