View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9837_low_6 (Length: 444)
Name: NF9837_low_6
Description: NF9837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9837_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 18 - 426
Target Start/End: Complemental strand, 24421302 - 24420894
Alignment:
| Q |
18 |
agagacctcacaatgtgaagagactagcaagtgcagggttaaaagcagattcagttttacagcgaaaaacggttagtcttaaggagttttatactttagg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24421302 |
agagacctcacaatgtgaagagactagcaagtgcagggctaaaagcagattcagttttacagcgaaaaacggttagtcttaaggagttttatactttagg |
24421203 |
T |
|
| Q |
118 |
accaaagctaggacaagggcaatttggaactacattcctttgtgtggagaaatctactgggaaagagtatgcatgcaagtcaatcatgaagaggaagttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24421202 |
accaaagctaggacaagggcaatttggaactacattcctttgtgtggagaaatctactgggaaagagtatgcatgcaagtcaatcatgaagaggaagttg |
24421103 |
T |
|
| Q |
218 |
ttgactgaagaggatgtggaagatgtgaggagagagattcagattatgcatcacttggctggcagttcgaatgtgatttcgattaaggaagcttctgagg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24421102 |
ttgactgaagaggatgtggaagatgtgaggagagagattcagattatgcatcacttggctggcagttcgaatgtgatttcgattaaggaagcttctgagg |
24421003 |
T |
|
| Q |
318 |
atgctgttgctgttcatgttgttatggagttgtgtgcaggtggtgaactttttgataggattgtggaaagagggcattatacagaaagaaaggccgcgaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24421002 |
atgctgttgctgttcatgttgttatggagttgtgtgcaggtggtgaactttttgataggattgtggaaagagggcattatacagaaagaaaggcggcgaa |
24420903 |
T |
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| Q |
418 |
acttgcaag |
426 |
Q |
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||||||||| |
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| T |
24420902 |
acttgcaag |
24420894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 308 - 408
Target Start/End: Original strand, 24042521 - 24042621
Alignment:
| Q |
308 |
gcttctgaggatgctgttgctgttcatgttgttatggagttgtgtgcaggtggtgaactttttgataggattgtggaaagagggcattatacagaaagaa |
407 |
Q |
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|||| ||| ||||| ||||| |||||||||||||||||||| ||||| |||||||| ||||| ||||||||| | | ||||||||||||| ||||||| |
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| T |
24042521 |
gcttatgaagatgccgttgcggttcatgttgttatggagttatgtgctggtggtgagcttttcgataggattatacagagagggcattatagtgaaagaa |
24042620 |
T |
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| Q |
408 |
a |
408 |
Q |
| |
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| |
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| T |
24042621 |
a |
24042621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 379
Target Start/End: Original strand, 18399901 - 18400074
Alignment:
| Q |
206 |
aagaggaagttgttgactgaagaggatgtggaagatgtgaggagagagattcagattatgcatcacttggctggcagttcgaatgtgatttcgattaagg |
305 |
Q |
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|||||||| ||| | || || |||||||| || |||||||| ||||| |||||||| |||||||| ||||| || | | ||||| || || || || | |
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| T |
18399901 |
aagaggaaattggtaaccgatgaggatgttgaggatgtgagaagagaaattcagataatgcatcatttggccggtcatcctaatgttatatccatcaaag |
18400000 |
T |
|
| Q |
306 |
aagcttctgaggatgctgttgctgttcatgttgttatggagttgtgtgcaggtggtgaactttttgataggatt |
379 |
Q |
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|||| ||| ||||| | || ||||||||||| ||||| ||||||||||||||||| ||||| ||| ||||| |
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| T |
18400001 |
gtgcttatgaagatgcaatggcggttcatgttgtgatggaattgtgtgcaggtggtgagcttttcgatcggatt |
18400074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 381
Target Start/End: Complemental strand, 21390020 - 21389967
Alignment:
| Q |
328 |
tgttcatgttgttatggagttgtgtgcaggtggtgaactttttgataggattgt |
381 |
Q |
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||||||| ||||||||||| | |||| ||||||||| ||||||||| ||||||| |
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| T |
21390020 |
tgttcatcttgttatggagctttgtgaaggtggtgagctttttgatcggattgt |
21389967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 325 - 406
Target Start/End: Original strand, 25214586 - 25214667
Alignment:
| Q |
325 |
tgctgttcatgttgttatggagttgtgtgcaggtggtgaactttttgataggattgtggaaagagggcattatacagaaaga |
406 |
Q |
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||||||| || |||||||||| ||||||| ||||||||||||||||||||||||||| | | ||| ||||||||||||||| |
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| T |
25214586 |
tgctgtttatcttgttatggaattgtgtgaaggtggtgaactttttgataggattgttgctaaaggtcattatacagaaaga |
25214667 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 325 - 382
Target Start/End: Original strand, 39940183 - 39940240
Alignment:
| Q |
325 |
tgctgttcatgttgttatggagttgtgtgcaggtggtgaactttttgataggattgtg |
382 |
Q |
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|||||||||| ||||||||||| | |||| |||||||||||||||||||||||||||| |
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| T |
39940183 |
tgctgttcatattgttatggagctttgtgaaggtggtgaactttttgataggattgtg |
39940240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 399
Target Start/End: Complemental strand, 36384328 - 36384254
Alignment:
| Q |
325 |
tgctgttcatgttgttatggagttgtgtgcaggtggtgaactttttgataggattgtggaaagagggcattatac |
399 |
Q |
| |
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|||||||||| ||||||||||| | |||| ||||||||| ||||||||| ||||||| | ||||| |||||||| |
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| T |
36384328 |
tgctgttcatcttgttatggagctttgtgaaggtggtgagctttttgatcggattgttgctagaggacattatac |
36384254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 196
Target Start/End: Original strand, 43462533 - 43462597
Alignment:
| Q |
132 |
aagggcaatttggaactacattcctttgtgtggagaaatctactgggaaagagtatgcatgcaag |
196 |
Q |
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||||| ||||||||||||| | |||||| |||||||||| || |||||| ||||||||||||| |
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| T |
43462533 |
aaggggaatttggaactacttcactttgtttggagaaatcaaccgggaaaacgtatgcatgcaag |
43462597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 378
Target Start/End: Original strand, 20501355 - 20501404
Alignment:
| Q |
329 |
gttcatgttgttatggagttgtgtgcaggtggtgaactttttgataggat |
378 |
Q |
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||||||||||||||||| | ||||| ||||||||||||||||||||||| |
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| T |
20501355 |
gttcatgttgttatggaactttgtgctggtggtgaactttttgataggat |
20501404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 369
Target Start/End: Complemental strand, 38810376 - 38810334
Alignment:
| Q |
327 |
ctgttcatgttgttatggagttgtgtgcaggtggtgaactttt |
369 |
Q |
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|||||||| | ||||||||||||||||| |||||||||||||| |
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| T |
38810376 |
ctgttcatttggttatggagttgtgtgctggtggtgaactttt |
38810334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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