View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9838_high_10 (Length: 225)

Name: NF9838_high_10
Description: NF9838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9838_high_10
NF9838_high_10
[»] chr5 (3 HSPs)
chr5 (3-225)||(28532505-28532727)
chr5 (69-124)||(29021558-29021613)
chr5 (72-125)||(28673512-28673565)
[»] chr6 (2 HSPs)
chr6 (1-180)||(6588466-6588642)
chr6 (67-178)||(6416827-6416938)
[»] chr3 (3 HSPs)
chr3 (67-178)||(13469859-13469970)
chr3 (67-189)||(51763574-51763696)
chr3 (72-117)||(513925-513970)
[»] chr1 (1 HSPs)
chr1 (78-189)||(19467621-19467732)
[»] chr4 (3 HSPs)
chr4 (78-178)||(21833493-21833593)
chr4 (77-166)||(532589-532681)
chr4 (67-165)||(53761012-53761110)
[»] chr7 (1 HSPs)
chr7 (78-172)||(10615459-10615553)
[»] chr8 (1 HSPs)
chr8 (72-125)||(18314876-18314929)


Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 3 - 225
Target Start/End: Original strand, 28532505 - 28532727
Alignment:
Q  3 ggtctctcacggagagcagaagcaatgactgcatcggttaataattgcttataaccatcaatgttgacttcttggagaagcttacagttgctgaacaagt 102  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28532505 ggtctctcacggagagcagaagcaatgcctgcatcggttaataattgcttataaccatcaatgttgacttcttggagaagcttacagttgctgaacaagt 28532604  T
Q  103 ggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtgagagagcctctatcccattgttataactacg 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  28532605 ggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgtgaagtgaaagtgagagagcctctaccccattgttataactacg 28532704  T
Q  203 agtccgagtctctatcatagaga 225  Q
    ||| |||||||||||||||||||    
T  28532705 agttcgagtctctatcatagaga 28532727  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 124
Target Start/End: Original strand, 29021558 - 29021613
Alignment:
Q  69 acttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgat 124  Q
    ||||||| |||||||||||||||| | |  ||||||||||||||||||| ||||||    
T  29021558 acttcttcgagaagcttacagttgtttataaagtggaaaagtgattggtcgttgat 29021613  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 28673565 - 28673512
Alignment:
Q  72 tcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatg 125  Q
    |||| |||||||||||||||| | | ||| |||||||||||||||| |||||||    
T  28673565 tcttcgagaagcttacagttgtttatcaaatggaaaagtgattggtcgttgatg 28673512  T

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Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 6588642 - 6588466
Alignment:
Q  1 ttggtctctcacggagagcagaagcaatgactgcatcggttaataattgcttataaccatcaatgttgacttcttggagaagcttacagttgctgaacaa 100  Q
    ||||||||||||||||||||||||||||| |||||| |||||||    |   | |||||   ||||||||||| |||||||||||||| ||| |||||||    
T  6588642 ttggtctctcacggagagcagaagcaatgcctgcattggttaattcacg---acaaccaaatatgttgacttcctggagaagcttacaattgttgaacaa 6588546  T
Q  101 gtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtgagagagcct 180  Q
    ||||||||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||| |||||  |||||||||||||    
T  6588545 gtggaaaagcgattgattgttgatgggaaagtaagaaagattaaccttgcgaagtttgaaaagtgcgagtgagagagcct 6588466  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 67 - 178
Target Start/End: Original strand, 6416827 - 6416938
Alignment:
Q  67 tgacttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtga 166  Q
    ||||||||| ||||||||||||||||  ||| || |||||||| ||||||||||| |  |||||   |||||||||||| ||||||||||| | |||||     
T  6416827 tgacttcttcgagaagcttacagttgtggaataactggaaaagggattggttgtttacaggaaatctagaaagattaactttgcggagtttaaaaagtgc 6416926  T
Q  167 aagtgagagagc 178  Q
    |||||| |||||    
T  6416927 aagtgatagagc 6416938  T

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Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 67 - 178
Target Start/End: Complemental strand, 13469970 - 13469859
Alignment:
Q  67 tgacttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtga 166  Q
    ||||||||| ||||||||||||||||  ||| ||||||||||||||| ||||||| || |||||   |||||||||||||||||||||||| | |||||     
T  13469970 tgacttcttcgagaagcttacagttgtggaataagtggaaaagtgataggttgtttataggaaaactagaaagattaaccttgcggagtttaaaaagtgc 13469871  T
Q  167 aagtgagagagc 178  Q
    |||||| |||||    
T  13469870 aagtgatagagc 13469859  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 189
Target Start/End: Complemental strand, 51763696 - 51763574
Alignment:
Q  67 tgacttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtga 166  Q
    |||| ||||||||||||||||||||||  |  | ||||||||| ||||| ||||| |||||| ||  ||||| ||||||||| || ||||||| ||| |     
T  51763696 tgacatcttggagaagcttacagttgcatagaaggtggaaaagcgattgattgtttatgggacagccagaaaaattaaccttacgcagtttgaaaagagc 51763597  T
Q  167 aagtgagagagcctctatcccat 189  Q
    |||||| || || | ||||||||    
T  51763596 aagtgaaagtgcttgtatcccat 51763574  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 513970 - 513925
Alignment:
Q  72 tcttggagaagcttacagttgctgaacaagtggaaaagtgattggt 117  Q
    ||||| ||||||||||||||  |||||||||||||||| |||||||    
T  513970 tcttgaagaagcttacagtttttgaacaagtggaaaagcgattggt 513925  T

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Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 78 - 189
Target Start/End: Complemental strand, 19467732 - 19467621
Alignment:
Q  78 agaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtgagagag 177  Q
    ||||||||||| ||| | |||||||| ||||  |||| || | | |||||||||  |||||||||||||||||||||||||||||||| |||||| ||||    
T  19467732 agaagcttacaattgttaaacaagtgaaaaatcgatttgtcgctcatgggaaagccagaaagattaaccttgcggagtttgagaagtgcaagtgaaagag 19467633  T
Q  178 cctctatcccat 189  Q
    |||||| |||||    
T  19467632 cctctaccccat 19467621  T

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Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 78 - 178
Target Start/End: Complemental strand, 21833593 - 21833493
Alignment:
Q  78 agaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtgagagag 177  Q
    ||||||||||| ||  | | |||||||||||| ||||| ||||| |||||||||  |||||||||||||||||||||||||| ||||| |||||| ||||    
T  21833593 agaagcttacaattctttagcaagtggaaaagagattgattgtttatgggaaagccagaaagattaaccttgcggagtttgataagtgcaagtgaaagag 21833494  T
Q  178 c 178  Q
    |    
T  21833493 c 21833493  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 166
Target Start/End: Original strand, 532589 - 532681
Alignment:
Q  77 gagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatg--ggaaag-gaagaaagattaaccttgcggagtttgagaagtga 166  Q
    |||||||||||| ||  |||||||||||||||| ||||||| |||||||  |  | | | |||||||||||||||||||||||||| ||||||    
T  532589 gagaagcttacaatttttgaacaagtggaaaagcgattggtcgttgatgtagtcatgagtagaaagattaaccttgcggagtttgaaaagtga 532681  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 165
Target Start/End: Complemental strand, 53761110 - 53761012
Alignment:
Q  67 tgacttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtg 165  Q
    |||| ||||| ||||| ||||| ||  | |||||||||||||||||||| | | | ||||  |||  ||||||||||||||| |||||||||| |||||    
T  53761110 tgacctcttgaagaagattacaattcttcaacaagtggaaaagtgattgttcgattatggttaagccagaaagattaaccttacggagtttgaaaagtg 53761012  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 172
Target Start/End: Original strand, 10615459 - 10615553
Alignment:
Q  78 agaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtga 172  Q
    |||||||||||||||  || |||||||| ||| ||||| ||||| ||| ||||   |||||||||||||||||||||||| | ||||||||||||    
T  10615459 agaagcttacagttgtcgagcaagtggagaagggattgattgtttatgagaaaactagaaagattaaccttgcggagtttaaaaagtgaaagtga 10615553  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 18314929 - 18314876
Alignment:
Q  72 tcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatg 125  Q
    |||| |||||||||||||||  |||||||||||||||| ||||| | |||||||    
T  18314929 tcttcgagaagcttacagttcttgaacaagtggaaaagcgattgatcgttgatg 18314876  T

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