View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9838_high_5 (Length: 250)
Name: NF9838_high_5
Description: NF9838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9838_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 10316182 - 10316421
Alignment:
| Q |
1 |
ttagcgatataaatattagtagagaaaacactaataaaagctccagtatgacttccaaaaatgcatccataagtagaaacccatgagagcctttagatgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10316182 |
ttagcgatataaatattagtagagaaaacactaataaaagctccagtatgacttccaaaaatgcatccataagtagaaacccatgagagcctttagatgc |
10316281 |
T |
|
| Q |
101 |
actattaacgttgcattttatccaataaactaagggaattaaccaatataatgtacttgcttagaggaggatcatggcactaaacacttcaatactttag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10316282 |
actattaacgttgcattttatccaataaactaagggaattaaccaatataatgtacttgcttagaggaggatcatggcactaaacacttcaatactttag |
10316381 |
T |
|
| Q |
201 |
aataacaaactctttaatagatgagtacatgtgacctttg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10316382 |
aataacaaactctttaatagatgagtacatgtgacctttg |
10316421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 240
Target Start/End: Complemental strand, 23122089 - 23122017
Alignment:
| Q |
168 |
aggatcatggcactaaacacttcaatactttagaataacaaactctttaatagatgagtacatgtgacctttg |
240 |
Q |
| |
|
|||| |||| ||||||||||| ||||||| | ||| |||| |||||||||||||||||||| ||||||||| |
|
|
| T |
23122089 |
aggagcatgtcactaaacactaaaatacttcaagatagcaaattctttaatagatgagtacatttgacctttg |
23122017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University