View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9838_low_1 (Length: 903)
Name: NF9838_low_1
Description: NF9838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9838_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 848; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 848; E-Value: 0
Query Start/End: Original strand, 19 - 890
Target Start/End: Complemental strand, 39279492 - 39278621
Alignment:
| Q |
19 |
ctatgtcctttgcagtcgtcattttttcttccttctctcggaccaaggattcctccatatttttgaatccaatcctcaagaactttaattcctcattcaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39279492 |
ctatgtcctttgcagtcgtcattttttcttccttctctcggaccaaggattcctccatatttttgaatccaatcctcaagaactttaattcctcattcaa |
39279393 |
T |
|
| Q |
119 |
ttcatcattgcattcagacaatatgatacaattttcctctgcactttcagcccgactttcagctttagaaacctttgacttatgatcatttatcacattt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39279392 |
ttcatcattgcattcagacaatatgatacaattttcctctgcactttcagcccgactttcagctttagaaacctttgacttatgatcatttatcacattt |
39279293 |
T |
|
| Q |
219 |
tccatatctcttattgtggaatataacatactttgtttctccttattagcctcaacagatgattctgaattctgcaattgtagataaatttcttttagct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39279292 |
tccatatctcttattgtggaatataacatactttgtttctccttattagcctcaacagatgattctgaattctgcaattgtagataaatttcttttagct |
39279193 |
T |
|
| Q |
319 |
gcctctcaagcaaatgcaatttcataatgcctccaccacctttcaaaagattcaactcttcattgagttttgaattagtctctgtcaataacttacattt |
418 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39279192 |
gcctctcaagcaaatgcaatttcataatgcctccatcacctttcaaaagattcaactcttcattgagttttgaattagtctctgtcaataacttacattt |
39279093 |
T |
|
| Q |
419 |
agcttctgcaatatcagccctactctcggcatcaagtacagtttcttttagttcagcaatatgagttttcgtattacttacttcagcacatgaggcatca |
518 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39279092 |
agcttctgcaatatcagccctactctcggcatcaagtacagtttcttttagttcagcaatatgagttttcgtattacttacttcagcacatgaggcatca |
39278993 |
T |
|
| Q |
519 |
tacatattttgatattcattcgaagaggatttcacattccgtagatgaatttcagaatcttttagctgcttctcaagtaaagacaccttacctcttagag |
618 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39278992 |
tacatattttgatattcattcgaagaggacttcacattccgtagatgaatttcagaatcttttagctgcttctcaagtaaagacaccttacctcttagag |
39278893 |
T |
|
| Q |
619 |
cgaagatctcaggatcagaagggatttttgtatcttcggcgtcttttgaactagcttctgaaccatttgtctgacctataagagagacatttaattcacc |
718 |
Q |
| |
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|||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39278892 |
cgaagacctcaggatcagaagggatttgtgtatcttcagcgtcttttgaactagcttctgaaccatttgtctgacctataagagagacatttaattcacc |
39278793 |
T |
|
| Q |
719 |
ggtgctgctttcaatcttgttcaaaataatatccctggtatttaattgttctacaaaagtttcgagcttagcttgaagctcggattcacgccgacttaaa |
818 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39278792 |
ggtgctgctttcaatcttgttcaaaataatatccctggtatttaattgttctacaaaagtttcgagcttagcttgaagctcggattcacgccgacttaaa |
39278693 |
T |
|
| Q |
819 |
ccattcaaattgaaatgagaaatctggagtctactcaacagactttttgaaattcccatcagaatctgatgt |
890 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39278692 |
ccattcaaattgaaatgagaaatctggagtctactcaacagactttttgaaattcccatcagaatctcatgt |
39278621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 2e-30; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 528 - 752
Target Start/End: Original strand, 31466367 - 31466590
Alignment:
| Q |
528 |
tgatattcattcgaagaggatttcacattccgtagatgaatttcagaatcttttagctgcttctcaagtaaagacaccttacctcttagagcgaagatct |
627 |
Q |
| |
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||||||||| | |||| ||| || |||||| ||| ||||||| |||||| | | |||||||||||||||| |||||||| |||||||| ||||| || |
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| T |
31466367 |
tgatattcaatagaagtggactttacattcaatagctgaattttagaatccatcaactgcttctcaagtaaatacaccttatctcttagaatgaagacct |
31466466 |
T |
|
| Q |
628 |
caggatcagaagggatttttgtatcttcggcgtcttttgaactagcttctgaaccatttgtctgacctataagagagacatttaattcaccggtgctgct |
727 |
Q |
| |
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||| ||| |||| ||| | ||||||| |||||||||||| ||||||||| ||||| ||| ||||||| ||||| | |||||||||||||||||||| |
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| T |
31466467 |
cagaatcggaagccattcgtttatcttcagcgtcttttgaattagcttctgcaccatgtgtttgacctagaagag-ggtgtttaattcaccggtgctgct |
31466565 |
T |
|
| Q |
728 |
ttcaatcttgttcaaaataatatcc |
752 |
Q |
| |
|
|||| || |||||| |||||||||| |
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| T |
31466566 |
ttcagtcgtgttcataataatatcc |
31466590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 31465023 - 31465102
Alignment:
| Q |
40 |
ttttttcttccttctctcggaccaaggattcctccatatttttgaatccaatcctcaagaactttaattcctcattcaat |
119 |
Q |
| |
|
||||| |||| ||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
31465023 |
tttttgcttcattctctccgcgcaaggattcctccatattttttaatccaatcctcaagaactttaattcctgattcaat |
31465102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 524 - 615
Target Start/End: Original strand, 31466111 - 31466202
Alignment:
| Q |
524 |
attttgatattcattcgaagaggatttcacattccgtagatgaatttcagaatcttttagctgcttctcaagtaaagacaccttacctctta |
615 |
Q |
| |
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||||||||||| || |||||| || ||||||||||||| |||| ||||||||||||| |||| ||||| ||||||||||||||| |||||| |
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| T |
31466111 |
attttgatatttatacgaagatgacttcacattccgtatgtgaaattcagaatcttttcgctggttctcgagtaaagacaccttatctctta |
31466202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 91 - 227
Target Start/End: Complemental strand, 5663003 - 5662867
Alignment:
| Q |
91 |
tcctcaagaactttaattcctcattcaattcatcattgcattcagacaatatgatacaattttcctctgcactttcagcccgactttcagctttagaaac |
190 |
Q |
| |
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|||||||||| ||| |||||| || || ||| |||| ||||||| ||||||||||| || ||||||||||| ||||| |||| |||||||||||||| |
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| T |
5663003 |
tcctcaagaaacttacttcctcgtttaaatcagcattagattcagataatatgatacacttgtcctctgcactgtcagctagactctcagctttagaaac |
5662904 |
T |
|
| Q |
191 |
ctttgacttatgatcatttatcacattttccatatct |
227 |
Q |
| |
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|||||||||| |||| |||||||||| |||||||||| |
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| T |
5662903 |
ctttgacttaagatcctttatcacatgttccatatct |
5662867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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