View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9838_low_14 (Length: 253)
Name: NF9838_low_14
Description: NF9838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9838_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 54890206 - 54889962
Alignment:
| Q |
1 |
tcgtgttttgacacttccggtctttgtaacaaatacatagagaactttactagcaataaaaatggtaagacaaaagtcggaaataaaaatagaggatgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54890206 |
tcgtgttttgacacttccggtctttgtaacaaatacatagagaactttgctagcaataaaaatggtaagacaaaagtcggaaataaaaatagaggatgag |
54890107 |
T |
|
| Q |
101 |
tttcttgcaaataattaagttgttttgattggaaaagacattgctagtctgtttggtacaaattatgaatgaatatgattttttgaagtgttgttgaatt |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54890106 |
tttcttgcaaataattcagttgttttgattggaaaagacattgctagtctgtttggtacaaattatgaatgaatatgattttttgaagtgttgttgaatt |
54890007 |
T |
|
| Q |
201 |
caactttcctaaatactgttttctcattttctattattctctgct |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
54890006 |
caactttcctaaatactgttttctcattttctattattctatgct |
54889962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University