View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9838_low_16 (Length: 250)
Name: NF9838_low_16
Description: NF9838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9838_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 28629422 - 28629178
Alignment:
| Q |
1 |
ttgatggaagacgaaactcatgcatcatccaatcagttttggtgccttttccggcactaccgcgatagtaaacaagtgnnnnnnngagtccaacacaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28629422 |
ttgatggaagacgaaactcatgcatcatccaatcagttttggtgccttttccggcactaccgcgatagtaaacaagtgtttttttgagtccaacacaatc |
28629323 |
T |
|
| Q |
101 |
atttccttctgctccatttgagtaaattggtttgtctattccagttgctttccaaaatccagagccagtcactctatttggcctaacgctgttcctatat |
200 |
Q |
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|||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
28629322 |
atttccttctgctccatttgagtatattgctttgtctattccagttgctttccagaatccagagccagtcactctatttggtctaacgctgttcctatat |
28629223 |
T |
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| Q |
201 |
tttcttcctctttggcaaaaatagtaaccttccttctctgctcct |
245 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28629222 |
tttcttcctctttggcaaaaaaagtaaccttccttctctgctcct |
28629178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 28614897 - 28614654
Alignment:
| Q |
1 |
ttgatggaagacgaaactcatgcatcatccaatcagttttggtgccttttccggcactaccgcgatagtaaacaagtgnnnnnnngagtccaacacaatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
28614897 |
ttgatggaagacgaaactcatgcatcatccaatcagttttggtgccttttccggcactaccacgatagtaaacaagtgtttttttgagtccaacacaatc |
28614798 |
T |
|
| Q |
101 |
atttccttctgctccatttgagtaaattggtttgtctattccagttgctttccaaaatccagagccagtcactctatttggcctaacgctgttcctatat |
200 |
Q |
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| T |
28614797 |
atttccttctgctccatttgagtaaattgctttgtctattccagttgctttccagaatccagagccagtcactctatttggcctaacgctgttcctatat |
28614698 |
T |
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| Q |
201 |
tttcttcctctttggcaaaaatagtaaccttccttctctgctcc |
244 |
Q |
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||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
28614697 |
tttcttcctctttggcaaaaaaagtaaccttccttttctgctcc |
28614654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 33728043 - 33728000
Alignment:
| Q |
7 |
gaagacgaaactcatgcatcatccaatcagttttggtgcctttt |
50 |
Q |
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| T |
33728043 |
gaagacgatactcatgcataatccaattagttttggtgcctttt |
33728000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 33727930 - 33727878
Alignment:
| Q |
132 |
ttgtctattccagttgctttccaaaatccagagccagtcactctatttggcct |
184 |
Q |
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|||||| ||||||||||||||||| | ||||| |||| |||||||||||||| |
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| T |
33727930 |
ttgtctgttccagttgctttccaatacccagatccagctactctatttggcct |
33727878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 147 - 212
Target Start/End: Complemental strand, 39633562 - 39633497
Alignment:
| Q |
147 |
gctttccaaaatccagagccagtcactctatttggcctaacgctgttcctatattttcttcctctt |
212 |
Q |
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||||||||||||||||| || ||||||||||| ||||| | ||||||||||||||||||||||||| |
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| T |
39633562 |
gctttccaaaatccagatcctgtcactctattaggccttatgctgttcctatattttcttcctctt |
39633497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 39633697 - 39633648
Alignment:
| Q |
9 |
agacgaaactcatgcatcatccaatcagttttggtgccttttccggcact |
58 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| || ||||| |
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| T |
39633697 |
agacgaaattcatgcatcatccaatcagttttggtgcctttccctgcact |
39633648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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