View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9838_low_17 (Length: 250)
Name: NF9838_low_17
Description: NF9838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9838_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 25804307 - 25804073
Alignment:
| Q |
1 |
ttgtgattttaatatagtgaagaattttttaggggggtcctcgtaaccacaacaataacactcccaaacctatcattgtgcaggtggttgctaattgcag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
25804307 |
ttgtgattttaatatagtgaagaattttttaggggggtcctcgtaaccacaacaataacactcccaaacctatcattgtgcaggtggtcgctaactgcag |
25804208 |
T |
|
| Q |
101 |
agcttttgctaactgcttagttgagcatgatataagctggtttttggtggtagtgataatcacctggttcttgttgatctgaggccatcagtaagcttgt |
200 |
Q |
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|||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25804207 |
agctcttgctaactgcttagttgagcatgatataaactgatttttggtggtagtgataatcacctggttcttgttgatctgaggccatcagtaagcttgt |
25804108 |
T |
|
| Q |
201 |
tgctcttttctttgtcaatataatgatagttctgt |
235 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
25804107 |
tgctcttttctttgtcaatataatgatagttctgt |
25804073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 51 - 207
Target Start/End: Complemental strand, 44146465 - 44146308
Alignment:
| Q |
51 |
aacaataacactcccaaacctatcattgtgcaggtggttgctaattgcagagcttttgctaactgcttagttgagcatga-tataagctggtttttggtg |
149 |
Q |
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|||||||||| ||| |||||||| || ||||||||||||||||| || ||||||||||||||| | ||| |||||||| | ||||| ||||||| ||||| |
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| T |
44146465 |
aacaataacattcctaaacctatgatggtgcaggtggttgctaactgtagagcttttgctaaccgattaattgagcatcaatataaactggtttctggtg |
44146366 |
T |
|
| Q |
150 |
gtagtgataatcacctggttcttgttgatctgaggccatcagtaagcttgttgctctt |
207 |
Q |
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|||| ||||||| ||| |||||||||||||||||||||| ||||| || |||||||| |
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| T |
44146365 |
atagtaataatcatctgattcttgttgatctgaggccatctgtaagattcttgctctt |
44146308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 51 - 237
Target Start/End: Complemental strand, 5750498 - 5750311
Alignment:
| Q |
51 |
aacaataacactcccaaacctatcattgtgcaggtggttgctaattgcagagcttttgctaactgcttagttgagcatga-tataagctggtttttggtg |
149 |
Q |
| |
|
|||||| |||||||| |||||||||| ||||||||||||||||| || |||||| |||||||| | |||||||||||||| ||||| ||||||| ||||| |
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| T |
5750498 |
aacaatgacactcccgaacctatcatcgtgcaggtggttgctaactgtagagctcttgctaaccggttagttgagcatgaatataaactggtttctggtg |
5750399 |
T |
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| Q |
150 |
gtagtgataatcacctggttcttgttgatctgaggccatcagtaagcttgttgctcttttctttgtcaatataatgatagttctgtct |
237 |
Q |
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| T |
5750398 |
gtagtgataatcacctggttcttgttgatctgaggccatcagtaagcttgttgctcttttctttgtcaataaaatgataattccgtct |
5750311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 5750671 - 5750621
Alignment:
| Q |
1 |
ttgtgattttaatatagtgaagaattttttaggggggtcctcgtaaccaca |
51 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
5750671 |
ttgtgattttaatacagtgaagaattttttaggggggtcctcataaccaca |
5750621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 62 - 237
Target Start/End: Complemental strand, 6828494 - 6828318
Alignment:
| Q |
62 |
tcccaaacctatcattgtgcaggtggttgctaattgcagagcttttgctaactgcttagttgagcatg-atataagctggtttttggtggtagtgataat |
160 |
Q |
| |
|
||||||||||||||||||||| ||| || |||| || |||||| || |||||| ||| |||||||||| |||||| ||||||| |||||||||||||||| |
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| T |
6828494 |
tcccaaacctatcattgtgcaagtgattactaactgtagagctcttactaactacttggttgagcatggatataaactggtttctggtggtagtgataat |
6828395 |
T |
|
| Q |
161 |
cacctggttcttgttgatctgaggccatcagtaagcttgttgctcttttctttgtcaatataatgatagttctgtct |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6828394 |
cacctggttcttgttgatctgaggccatcaataagcttgttgctcttttctttgtcaatataatgatagttctgtct |
6828318 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 6828673 - 6828621
Alignment:
| Q |
1 |
ttgtgattttaatatagtgaagaatttttt--aggggggtcctcgtaaccaca |
51 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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|
| T |
6828673 |
ttgtgattttaatatagtgaagaatttttttagggggggttctcgtaaccaca |
6828621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 62 - 237
Target Start/End: Complemental strand, 27965153 - 27964977
Alignment:
| Q |
62 |
tcccaaacctatcattgtgcaggtggttgctaattgcagagcttttgctaactgcttagttgagcatg-atataagctggtttttggtggtagtgataat |
160 |
Q |
| |
|
|||||| |||||||||||||| ||| || |||| || |||||| ||||||||| ||| |||||||||| |||||| ||||||| |||||||||||||||| |
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| T |
27965153 |
tcccaaccctatcattgtgcatgtgtttactaactgtagagctcttgctaactacttggttgagcatggatataaactggtttctggtggtagtgataat |
27965054 |
T |
|
| Q |
161 |
cacctggttcttgttgatctgaggccatcagtaagcttgttgctcttttctttgtcaatataatgatagttctgtct |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27965053 |
cacctggttcttgttgatctgaggccatcaataagcttgttgctcttttctttgtcaatataatgatagttctgtct |
27964977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 27965331 - 27965280
Alignment:
| Q |
1 |
ttgtgattttaatatagtgaagaatt-ttttaggggggtcctcgtaaccaca |
51 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||| |||||||||||| |
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|
| T |
27965331 |
ttgtgattttaatagagtgaagaatttttttaggggggttctcgtaaccaca |
27965280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 78 - 209
Target Start/End: Original strand, 32653437 - 32653569
Alignment:
| Q |
78 |
gtgcaggtggttgctaattgcagagcttttgctaactgcttagttgagcatg-atataagctggtttttggtggtagtgataatcacctggttcttgttg |
176 |
Q |
| |
|
||||||||||||||||| || | |||| |||||||| | |||||||| |||| |||||| ||||||| |||||||| |||||||||| |||||||||||| |
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| T |
32653437 |
gtgcaggtggttgctaactgtatagctcttgctaaccgattagttgaacatggatataaactggtttctggtggtaatgataatcacatggttcttgttg |
32653536 |
T |
|
| Q |
177 |
atctgaggccatcagtaagcttgttgctctttt |
209 |
Q |
| |
|
|||| ||| || |||||||| |||||||||| |
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|
| T |
32653537 |
atcttgggcaatttgtaagcttcttgctctttt |
32653569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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