View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9838_low_2 (Length: 853)
Name: NF9838_low_2
Description: NF9838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9838_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 54 - 490
Target Start/End: Complemental strand, 28612006 - 28611567
Alignment:
| Q |
54 |
tagaggcaatggaattgaaggaaagtattgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagta |
153 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28612006 |
tagaggcaatggaattgaaggaaagcatcgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagta |
28611907 |
T |
|
| Q |
154 |
aatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgggtctca-tag |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| ||| ||||||| | |
|
|
| T |
28611906 |
aatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacggg |
28611807 |
T |
|
| Q |
253 |
aaacactatattgtatctcttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgtcccgtggttt |
352 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
28611806 |
aaacactatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttt |
28611707 |
T |
|
| Q |
353 |
ttccctcggtattagagggttttccacgttaaatattggtattca--ttttttatcgctaccgctgcgctacaaaatccaatctcttttggatttttgaa |
450 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||| ||| ||||| ||||||||||||||| ||| |
|
|
| T |
28611706 |
ttccctcggtattagagggtttttcacgttaaatattggtgttcattttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttggaa |
28611607 |
T |
|
| Q |
451 |
ttttaatttacacttgagttaagctcgtcgagcccaacaa |
490 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28611606 |
ttttaatttacacttgcgttaagctcgtcgagcccaacaa |
28611567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 54 - 490
Target Start/End: Complemental strand, 28607244 - 28606805
Alignment:
| Q |
54 |
tagaggcaatggaattgaaggaaagtattgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagta |
153 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28607244 |
tagaggcaatggaattgaaggaaagcatcgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagta |
28607145 |
T |
|
| Q |
154 |
aatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgggtctca-tag |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| ||| ||||||| | |
|
|
| T |
28607144 |
aatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacggg |
28607045 |
T |
|
| Q |
253 |
aaacactatattgtatctcttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgtcccgtggttt |
352 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
28607044 |
aaacactatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttt |
28606945 |
T |
|
| Q |
353 |
ttccctcggtattagagggttttccacgttaaatattggtattca--ttttttatcgctaccgctgcgctacaaaatccaatctcttttggatttttgaa |
450 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| || | ||||||||||||||||||||||| ||| ||||| ||||||||||||||| ||| |
|
|
| T |
28606944 |
ttccctcggtattagagggtttttcacgttaaatattggtgttaattttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttggaa |
28606845 |
T |
|
| Q |
451 |
ttttaatttacacttgagttaagctcgtcgagcccaacaa |
490 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28606844 |
ttttaatttacacttgcgttaagctcgtcgagcccaacaa |
28606805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 309; E-Value: 1e-173
Query Start/End: Original strand, 82 - 490
Target Start/End: Original strand, 14178646 - 14179057
Alignment:
| Q |
82 |
tgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc |
181 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14178646 |
tgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc |
14178745 |
T |
|
| Q |
182 |
gggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgggtctca-tagaaacactatattgtatctcttgtgtgtg |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| ||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14178746 |
gggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtg |
14178845 |
T |
|
| Q |
281 |
taagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgtcccgtggtttttccctcggtattagagggttttccacg |
380 |
Q |
| |
|
| |||||||| ||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14178846 |
tgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacg |
14178945 |
T |
|
| Q |
381 |
ttaaatattggtattca--ttttttatcgctaccgctgcgctacaaaatccaatctcttttggatttttgaattttaatttacacttgagttaagctcgt |
478 |
Q |
| |
|
|||||||||||| |||| |||||||| |||||||||||||| ||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
14178946 |
ttaaatattggtgttcattttttttattgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgt |
14179045 |
T |
|
| Q |
479 |
cgagcccaacaa |
490 |
Q |
| |
|
|||||||||||| |
|
|
| T |
14179046 |
cgagcccaacaa |
14179057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 82 - 490
Target Start/End: Original strand, 14173892 - 14174303
Alignment:
| Q |
82 |
tgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc |
181 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14173892 |
tgaagcagaagtgaaaatacaaagtttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc |
14173991 |
T |
|
| Q |
182 |
gggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgggtctca-tagaaacactatattgtatctcttgtgtgtg |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| ||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14173992 |
gggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtg |
14174091 |
T |
|
| Q |
281 |
taagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgtcccgtggtttttccctcggtattagagggttttccacg |
380 |
Q |
| |
|
| |||||||| ||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14174092 |
tgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacg |
14174191 |
T |
|
| Q |
381 |
ttaaatattggtattca--ttttttatcgctaccgctgcgctacaaaatccaatctcttttggatttttgaattttaatttacacttgagttaagctcgt |
478 |
Q |
| |
|
|||||||||||| |||| ||||||||| ||||||||||||| ||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
14174192 |
ttaaatattggtgttcattttttttatcactaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgt |
14174291 |
T |
|
| Q |
479 |
cgagcccaacaa |
490 |
Q |
| |
|
|||||||||||| |
|
|
| T |
14174292 |
cgagcccaacaa |
14174303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 83 - 489
Target Start/End: Original strand, 44161543 - 44161949
Alignment:
| Q |
83 |
gaagcagaagtgagaat-acaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc |
181 |
Q |
| |
|
||||||||||||| || ||||||||||||||||| ||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44161543 |
gaagcagaagtgaaaaacacaaagcttctgtgtgt--agaggtgtgtgagaggaataatagagtgttgagtaaatccagagagtgtgggaaaaatacacc |
44161640 |
T |
|
| Q |
182 |
gggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgggtctca-tagaaacactatattgtatctcttgtgtgtg |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| ||| ||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
44161641 |
gggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtcttacgggaaacactatattgtatctcttgtgtgtg |
44161740 |
T |
|
| Q |
281 |
taagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgtcccgtggtttttccctcggtattagagggttttccacg |
380 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44161741 |
taagagagtggagaga--attgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacg |
44161838 |
T |
|
| Q |
381 |
ttaaatattggtattca--ttttttatcgctaccgctgcgctacaaaatccaatctcttttggatttttgaattttaatttacacttgagttaagctcgt |
478 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
44161839 |
ttaaatattggtgttcattttttttatcgctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgt |
44161938 |
T |
|
| Q |
479 |
cgagcccaaca |
489 |
Q |
| |
|
||||||||||| |
|
|
| T |
44161939 |
cgagcccaaca |
44161949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 80 - 489
Target Start/End: Original strand, 11104425 - 11104829
Alignment:
| Q |
80 |
attgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaataca |
179 |
Q |
| |
|
|||||||||||||| | |||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11104425 |
attgaagcagaagtca-aatacaaagcttctatgtg--tagaagtgtgtgagagaaaaaatagagtgttgagtaaatccagagagtgtaggaaaaataca |
11104521 |
T |
|
| Q |
180 |
ccgggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgggtctca-tagaaacactatattgtatctcttgtgtg |
278 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
11104522 |
ccgggtggatatcatctctataacttctaggtgttataaaataatagcatttgaataggagtgggtctcacgggaaacactatattgtatctctt-tgtg |
11104620 |
T |
|
| Q |
279 |
tgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgtcccgtggtttttccctcggtattagagggttttcca |
378 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||| ||||||||| |||| ||||||||||||||| ||| |||||| ||||||||| ||||| | |
|
|
| T |
11104621 |
tgtaagagagtggagagaatattgtaatattcttagatatggtggaatatttttcggagtttgtcccgtgg-tttaccctcgatattagaggattttcta |
11104719 |
T |
|
| Q |
379 |
cgttaaatattggtattcattttttatcgctaccgctgcgctacaaaatccaatctcttttggatttttgaattttaatttacacttgagttaagctcgt |
478 |
Q |
| |
|
||||||||||||| |||| ||||||||||||| |||||||| ||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
11104720 |
tgttaaatattggtgttca-tttttatcgctacagctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgt |
11104818 |
T |
|
| Q |
479 |
cgagcccaaca |
489 |
Q |
| |
|
||||||||||| |
|
|
| T |
11104819 |
cgagcccaaca |
11104829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 180; E-Value: 9e-97
Query Start/End: Original strand, 189 - 490
Target Start/End: Complemental strand, 48827000 - 48826701
Alignment:
| Q |
189 |
tatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgggtctcatag-aaacactatattgtatctcttgtgtgtgtaagaga |
287 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||||| |||||||||| ||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
48827000 |
tatcatctctataacttctaggtgctataaaataatagcattcaaataggagtgaatctcacgggaaacactatattgtatctcttgtgtgtgtaagaga |
48826901 |
T |
|
| Q |
288 |
gtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaata |
387 |
Q |
| |
|
| ||||||||||||||||||||||| ||||||||||||||| |||| ||| |||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
48826900 |
gcgaagagaatattgtaatattctttaatatagtggaatatttttcggag-ttgtcccgtgatttttccctcggtattagaggattttccacgttaaata |
48826802 |
T |
|
| Q |
388 |
ttggtattcattttttatcgctaccgctgcgctacaaaatccaatctcttttggatttttgaattttaatttacacttgagttaagctcgtcgagcccaa |
487 |
Q |
| |
|
||||| ||| |||| |||||||||||||||||| ||| |||||||||| ||| ||||| |||||||||||||| ||| |||||||||||||| ||||| |
|
|
| T |
48826801 |
ttggtgttctttttctatcgctaccgctgcgctgcaagatccaatctc--ttgaattttgaaattttaatttacaattgcgttaagctcgtcgatcccaa |
48826704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 208 - 376
Target Start/End: Complemental strand, 24726454 - 24726288
Alignment:
| Q |
208 |
aggtgttgtaaaataatagcattcgaataggagtgggtctcatagaaa-cactatattgtatctcttgtgtgtgtaagagagtgaagagaatattgtaat |
306 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||| ||||| |||| || |||| |||||||| |||| |||||||| || |||||||||| | || |
|
|
| T |
24726454 |
aggtgttgtaaaataataacatttgaataggagtgg-tctcacggaaaacaatatagtgtatctc--gtgtcggtaagagaatggagagaatattattat |
24726358 |
T |
|
| Q |
307 |
attcttaaatatagtggaatatctttcagagtttgtcccgtggtttttccctcggtattagagggttttc |
376 |
Q |
| |
|
||||| |||||| |||||||| |||||||||||||| ||||| |||||||| | ||||||| ||||||| |
|
|
| T |
24726357 |
gttctttaatataatggaatatttttcagagtttgtctcgtggcttttcccttgatattagatggttttc |
24726288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 292 - 462
Target Start/End: Complemental strand, 48708255 - 48708086
Alignment:
| Q |
292 |
agagaatattgtaatattcttaaatatagtggaatatctttcagagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattgg |
391 |
Q |
| |
|
|||||||||||||||||| || |||||| || ||||| ||| ||||||||| ||||||||||| || |||||| || ||||| || |||||||||||| |
|
|
| T |
48708255 |
agagaatattgtaatattttttaatataatgaaatattttttggagtttgtcacgtggtttttctcttagtattatagagtttttcatgttaaatattgg |
48708156 |
T |
|
| Q |
392 |
tattcattttttatcgctaccgctgcgctacaaaatccaatctcttttggatttttgaattttaatttaca |
462 |
Q |
| |
|
|||| | ||||||||| ||| ||||| | || || |||| |||||| ||||| ||||||||||||||| |
|
|
| T |
48708155 |
tattta-attttatcgccaccactgcgttgtaagattcaatttcttttatattttggaattttaatttaca |
48708086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 14175484 - 14175537
Alignment:
| Q |
7 |
tttggtggtggaaaatggaaacttaccaaaggatcgttgatgattgctagaggc |
60 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14175484 |
tttggtgatggaaaatggaaacttaccaaaggatcgttgatgattgctagaggc |
14175537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 28610394 - 28610341
Alignment:
| Q |
7 |
tttggtggtggaaaatggaaacttaccaaaggatcgttgatgattgctagaggc |
60 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28610394 |
tttggtgatggaaaatggaaacttaccaaaggatcgttgatgattgctagaggc |
28610341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 77 - 490
Target Start/End: Original strand, 12930626 - 12931041
Alignment:
| Q |
77 |
agtattgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaat |
176 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12930626 |
agtattgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaat |
12930725 |
T |
|
| Q |
177 |
acaccgggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgggtctca-tagaaacactatattgtatctcttgt |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||| ||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
12930726 |
acaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaataaaagtaggtctcacgggaaacactatattgtatctcttgt |
12930825 |
T |
|
| Q |
276 |
gtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgtcccgtggtttttccctcggtattagagggtttt |
375 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12930826 |
gtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggtttt |
12930925 |
T |
|
| Q |
376 |
ccacgttaaatattggtattca-ttttttatcgctaccgctgcgctacaaaatccaatctcttttggatttttgaattttaatttacacttgagttaagc |
474 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||||||| ||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
12930926 |
ccacgttaaatattggtgttcatttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagc |
12931025 |
T |
|
| Q |
475 |
tcgtcgagcccaacaa |
490 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
12931026 |
tcgtcgagcccaacaa |
12931041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 77 - 489
Target Start/End: Original strand, 12935372 - 12935786
Alignment:
| Q |
77 |
agtattgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaat |
176 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12935372 |
agtattgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaat |
12935471 |
T |
|
| Q |
177 |
acaccgggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgggtctca-tagaaacactatattgtatctcttgt |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||||||| || || ||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
12935472 |
acaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagagtaaaagtaggtctcacgggaaacactatattgtatctcttgt |
12935571 |
T |
|
| Q |
276 |
gtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgtcccgtggtttttccctcggtattagagggtttt |
375 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12935572 |
gtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggtttt |
12935671 |
T |
|
| Q |
376 |
ccacgttaaatattggtattca-ttttttatcgctaccgctgcgctacaaaatccaatctcttttggatttttgaattttaatttacacttgagttaagc |
474 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||||||| ||| ||||| | ||||||| ||||| ||||||||||||||||||| ||||||| |
|
|
| T |
12935672 |
ccacgttaaatattggtgttcatttttttatcgctaccgctgcgctgcaagatccagtttcttttgaattttggaattttaatttacacttgcgttaagc |
12935771 |
T |
|
| Q |
475 |
tcgtcgagcccaaca |
489 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
12935772 |
tcgtcgagcccaaca |
12935786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 12932214 - 12932267
Alignment:
| Q |
7 |
tttggtggtggaaaatggaaacttaccaaaggatcgttgatgattgctagaggc |
60 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12932214 |
tttggtgatggaaaatggaaacttaccaaaggatcgttgatgattgctagaggc |
12932267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 77 - 489
Target Start/End: Original strand, 34907089 - 34907503
Alignment:
| Q |
77 |
agtattgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaat |
176 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34907089 |
agtattgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaat |
34907188 |
T |
|
| Q |
177 |
acaccgggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgggtctca-tagaaacactatattgtatctcttgt |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||| ||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
34907189 |
acaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaataaaagtaggtctcacgggaaacactatattgtatctcttgt |
34907288 |
T |
|
| Q |
276 |
gtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgtcccgtggtttttccctcggtattagagggtttt |
375 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34907289 |
gtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggtttt |
34907388 |
T |
|
| Q |
376 |
ccacgttaaatattggtattca-ttttttatcgctaccgctgcgctacaaaatccaatctcttttggatttttgaattttaatttacacttgagttaagc |
474 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||||||| ||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
34907389 |
ccacgttaaatattggtgttcatttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagc |
34907488 |
T |
|
| Q |
475 |
tcgtcgagcccaaca |
489 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
34907489 |
tcgtcgagcccaaca |
34907503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 511 - 720
Target Start/End: Original strand, 2839207 - 2839423
Alignment:
| Q |
511 |
tgaatacaaaatagttatatatccttatgaaggtagtattttgggaaaacnnnnnnncaagccaaagaac----aggtaacatatcaatcttctcaaaga |
606 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||| |||| || ||||||| ||||||||||||||| |
|
|
| T |
2839207 |
tgaatacaaaatagttataaatccttatgaaggtagtattttgggaaaacagaaaaacaacccacggaacagagagataacataacaatcttctcaaaga |
2839306 |
T |
|
| Q |
607 |
gaga----cacacaaaggagaacatactagtaca---attattataatcatgaaaagc---atagtgcaaatcttcttagtagtccttctctaattcttg |
696 |
Q |
| |
|
|||| ||||||||||||||||||||| |||| |||||||| |||||||||| | |||||||||||| |||||||||||||||||||| |
|
|
| T |
2839307 |
gagagaggcacacaaaggagaacatactaatacaattattattattatcatgaaaaacataatagtgcaaatc-------tagtccttctctaattcttg |
2839399 |
T |
|
| Q |
697 |
aaatattcattcctccttcgcctt |
720 |
Q |
| |
|
||||||||||| |||||| ||||| |
|
|
| T |
2839400 |
aaatattcattactcctttgcctt |
2839423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 604 - 720
Target Start/End: Complemental strand, 2374041 - 2373926
Alignment:
| Q |
604 |
agagagacacacaaaggagaacatactagtacaatta---ttataatcatgaaaagc---atagtgcaaatcttcttagtagtccttctctaattcttga |
697 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||| |||| |||||||||| | |||||||||||| ||||||||||||||||||||| |
|
|
| T |
2374041 |
agagaggcacacaaaggagaacatactaatacaattattattattatcatgaaaaacataatagtgcaaatc-------tagtccttctctaattcttga |
2373949 |
T |
|
| Q |
698 |
aatattcattcctccttcgcctt |
720 |
Q |
| |
|
|||||||||| ||||| ||||| |
|
|
| T |
2373948 |
aatattcattaatcctttgcctt |
2373926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 604 - 720
Target Start/End: Original strand, 2382030 - 2382145
Alignment:
| Q |
604 |
agagagacacacaaaggagaacatactagtaca---attattataatcatgaaaagc---atagtgcaaatcttcttagtagtccttctctaattcttga |
697 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||| |||||||| |||||||||| | |||||||||||| ||||||||||||||||||||| |
|
|
| T |
2382030 |
agagaggcacacaaaggagaacatactaatacaattattattattatcatgaaaaacataatagtgcaaatc-------tagtccttctctaattcttga |
2382122 |
T |
|
| Q |
698 |
aatattcattcctccttcgcctt |
720 |
Q |
| |
|
|||||||||| ||||| ||||| |
|
|
| T |
2382123 |
aatattcattaatcctttgcctt |
2382145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 309; Significance: 1e-173; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-173
Query Start/End: Original strand, 69 - 489
Target Start/End: Complemental strand, 37040849 - 37040426
Alignment:
| Q |
69 |
tgaaggaaagtattgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtg |
168 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
37040849 |
tgaaggaaagcattgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtg |
37040750 |
T |
|
| Q |
169 |
ggaaaaatacaccgggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgggtctcatag-aaacactatattgta |
267 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| ||| ||||||| | ||||||||||||||| |
|
|
| T |
37040749 |
ggaaaaatacatcgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacggaaaacactatattgta |
37040650 |
T |
|
| Q |
268 |
tctcttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgtcccgtggtttttccctcggtattag |
367 |
Q |
| |
|
|||||||||||||| |||||||| ||| ||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37040649 |
tctcttgtgtgtgtgagagagtggagaaaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattag |
37040550 |
T |
|
| Q |
368 |
agggttttccacgttaaatattggtattca--ttttttatcgctaccgctgcgctacaaaatccaatctcttttggatttttgaattttaatttacactt |
465 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||| ||||| ||| ||||||||||| |||||||||||||||||| |
|
|
| T |
37040549 |
agggttttccacgttaaatattggtgttcattttttttatcgctaccgctgcgctgcaagatccagtcttttttggattttggaattttaatttacactt |
37040450 |
T |
|
| Q |
466 |
gagttaagctcgtcgagcccaaca |
489 |
Q |
| |
|
| |||||||||||||||||||||| |
|
|
| T |
37040449 |
gcgttaagctcgtcgagcccaaca |
37040426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 85 - 490
Target Start/End: Original strand, 15290195 - 15290595
Alignment:
| Q |
85 |
agcagaagtgagaatacaaa---gcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc |
181 |
Q |
| |
|
||||||||||| |||||||| |||||||||||| ||||||||||||||| ||||||||||| |||||||||| ||||||| ||||||||||| |
|
|
| T |
15290195 |
agcagaagtgaaaatacaaaaaagcttctgtgtgt--agaagtgtgtgagaa------tagagtgttgactaaatccagaaagtgtgg-aaaaatacacc |
15290285 |
T |
|
| Q |
182 |
gggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgggtctcatagaaacactatattgtatctcttgtgtgtgt |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15290286 |
gggtgggtatcatctctataacttctaggtgctg--aaataatagcattcgaataggagtgggtctcacggaaacactatattgtatctcttgtgtgtgt |
15290383 |
T |
|
| Q |
282 |
aagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgtcccgtggtttttccctcggtattagagggttttccacgt |
381 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
15290384 |
aagagagtggagagaatattgtaatattcttaaatatagtggaaaatcttttggagtttgtcccgtggtttatacctcggtattagagggttttccacgt |
15290483 |
T |
|
| Q |
382 |
taaatattggtattca--ttttttatcgctaccgctgcgctacaaaatccaatctc-ttttggatttttgaattttaatttacacttgagttaagctcgt |
478 |
Q |
| |
|
||||||||||| |||| ||||||||||||| |||||||| ||| |||||||||| ||||||||||| |||||||||||||| ||| ||||||||||| |
|
|
| T |
15290484 |
taaatattggtgttcattttttttatcgctaaggctgcgctgcaagatccaatctctttttggattttgaaattttaatttacaattgcgttaagctcgt |
15290583 |
T |
|
| Q |
479 |
cgagcccaacaa |
490 |
Q |
| |
|
|||||||||||| |
|
|
| T |
15290584 |
cgagcccaacaa |
15290595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 78 - 489
Target Start/End: Original strand, 12098956 - 12099361
Alignment:
| Q |
78 |
gtattgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaata |
177 |
Q |
| |
|
||||||||| |||||||| | ||||||| || ||||||| |||||| ||||| | ||||||||||||||||||||||| ||||| | | | |||||| |
|
|
| T |
12098956 |
gtattgaagtagaagtgaaactacaaagtttttgtgtgt--agaagtatgtgaaaggaaaaatagagtgttgagtaaattcagag--tctcg--aaaata |
12099049 |
T |
|
| Q |
178 |
caccgggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgggtctca-tagaaacactatattgtatctcttgtg |
276 |
Q |
| |
|
| | ||| |||||||||||||||||| |||||||| |||||||||| |||| ||||||||||| |||||| ||||||||| ||||||| ||||||||| |
|
|
| T |
12099050 |
gattgagtgagtatcatctctataacttttaggtgttataaaataatatcatttgaataggagtgagtctcactagaaacacaatattgtgtctcttgtg |
12099149 |
T |
|
| Q |
277 |
tgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgtcccgtggtttttccctcggtattagagggttttc |
376 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |||||||| ||| | |||| ||||||||||| |||||||||| ||| ||||||||||||| |
|
|
| T |
12099150 |
cgtgtaagagagtggagagaatattgtaatattctttaatatagttgaaattttttcggagtttgtcccttggtttttccttcgtcattagagggttttt |
12099249 |
T |
|
| Q |
377 |
cacgttaaatattggtattcattttttatcgctaccgctgcgctacaaaatccaatctcttttggatttttgaattttaatttacacttgagttaagctc |
476 |
Q |
| |
|
||||| |||||||| | |||| |||||||||||| || || ||| ||| ||| |||||||||||||||| ||||||||||||||||| | ||||| ||| |
|
|
| T |
12099250 |
cacgtaaaatattgcttttca-tttttatcgctatcggtgagctgcaagatcatatctcttttggattttggaattttaatttacactcgcgttaaactc |
12099348 |
T |
|
| Q |
477 |
gtcgagcccaaca |
489 |
Q |
| |
|
||||||||||||| |
|
|
| T |
12099349 |
gtcgagcccaaca |
12099361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 77 - 328
Target Start/End: Original strand, 12081968 - 12082215
Alignment:
| Q |
77 |
agtattgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaat |
176 |
Q |
| |
|
|||||||||||| |||||| |||||||| || | ||||||||||||||||| |||||| |||||||||| ||||||||||| | | ||||||||| |
|
|
| T |
12081968 |
agtattgaagcataagtgaagatacaaagttttt---tgtgtagaagtgtgtgatcagaaaattagagtgttgggtaaatccagaaaaag-gggaaaaat |
12082063 |
T |
|
| Q |
177 |
acaccgggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgggtctcat-agaaacactatattgtatctcttgt |
275 |
Q |
| |
|
| | ||||| ||||| |||||||||||||||||| | | |||||||||| |||| ||||||||| | ||||||| ||||||||||||||||||||||| | |
|
|
| T |
12082064 |
atatcgggtaggtattatctctataacttctaggcgctataaaataataacatttgaataggagcgagtctcattagaaacactatattgtatctctttt |
12082163 |
T |
|
| Q |
276 |
gtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatat |
328 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
12082164 |
ccgtgtaagagagtggagaaaatattgtaatattctt-aatatagtggaatat |
12082215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 233 - 466
Target Start/End: Complemental strand, 2757469 - 2757236
Alignment:
| Q |
233 |
aataggagtgggtctca-tagaaacactatattgtatctcttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctt |
331 |
Q |
| |
|
|||||||||| |||||| || |||||||||||||||||||||| ||||| ||||||||| |||||||| || |||||| |||||||||||||||||| || |
|
|
| T |
2757469 |
aataggagtgtgtctcactaaaaacactatattgtatctcttgagtgtgaaagagagtggagagaatagtgcaatatttttaaatatagtggaatat-tt |
2757371 |
T |
|
| Q |
332 |
tcagagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtattcattttttatcgctaccgctgcgctacaaaatccaa |
431 |
Q |
| |
|
||| | |||||| | |||||||||| | | |||| |||| ||| || |||||||||||| || | ||||||||| || ||| | || || ||| ||| |
|
|
| T |
2757370 |
tcaaaatttgtctcatggtttttccttaagcattaaaggggttttcatattaaatattggtgttaaatttttatcgttattgctacactgcataattcaa |
2757271 |
T |
|
| Q |
432 |
tctcttttggatttttgaattttaatttacacttg |
466 |
Q |
| |
|
| ||||||| ||||| ||||||||||||||||||| |
|
|
| T |
2757270 |
tttcttttgaattttggaattttaatttacacttg |
2757236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 399 - 489
Target Start/End: Original strand, 12084661 - 12084751
Alignment:
| Q |
399 |
tttttatcgctaccgctgcgctacaaaatccaatctcttttggatttttgaattttaatttacacttgagttaagctcgtcgagcccaaca |
489 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||| ||| ||||||||| ||||||||||||| || | ||||||||||| |||||||||| |
|
|
| T |
12084661 |
tttttatcgctaccgttgcgctacaagatccaatgtctattggattttgaaattttaatttaccctcgtgttaagctcgttgagcccaaca |
12084751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 74 - 143
Target Start/End: Original strand, 15302891 - 15302960
Alignment:
| Q |
74 |
gaaagtattgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaataga |
143 |
Q |
| |
|
||||| || ||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15302891 |
gaaagcatcgaagcagaattgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagagcaaaaataga |
15302960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 15290640 - 15290693
Alignment:
| Q |
7 |
tttggtggtggaaaatggaaacttaccaaaggatcgttgatgattgctagaggc |
60 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
15290640 |
tttggtgatggaaaatggaaacttaccaaaggatcgttgatggttactagaggc |
15290693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 62 - 490
Target Start/End: Original strand, 8539118 - 8539549
Alignment:
| Q |
62 |
atggaattgaaggaaagtattgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccaga |
161 |
Q |
| |
|
||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||| |||| |
|
|
| T |
8539118 |
atggaattgaaggaaagcatcgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatatagtgttcagtaaattcaga |
8539217 |
T |
|
| Q |
162 |
gagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgggtctcatagaaacactat |
261 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
8539218 |
gagtgtgggaaaaatacatcggatgggtatcatctctataacttttaggtgctgtaaaataatagcaatcgaataggagtgggtctcacggaaacactat |
8539317 |
T |
|
| Q |
262 |
a---ttgtatctcttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgtcccgtggtttttccct |
358 |
Q |
| |
|
| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
8539318 |
aatattgtatctcttgtgtgtgtaagagagtggagataatattgtaatattcttaaatatagtggaatatctttcggagtttgtcccgtgatttttccct |
8539417 |
T |
|
| Q |
359 |
cggtattagagggttttccacgttaaatattggtattcattttttatcgctaccgctgcgctacaaaatccaatctcttttggatttttgaattttaatt |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||||| | |||||||||||| ||| |||||||||||||| || ||| ||||||||||| |
|
|
| T |
8539418 |
cggtattagagggttttccacgttaaatattgatgttcattttttattgttaccgctgcgctgcaagatccaatctcttttagaatttggaattttaatt |
8539517 |
T |
|
| Q |
459 |
tacacttgagttaagctcgtcgagcccaacaa |
490 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |
|
|
| T |
8539518 |
tacacttgcgttaagctcgtcgagcccaacaa |
8539549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 233 - 343
Target Start/End: Original strand, 42506060 - 42506169
Alignment:
| Q |
233 |
aataggagtgggtctca-tagaaacactatattgtatctcttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctt |
331 |
Q |
| |
|
|||||||| |||||||| |||||||| || |||| ||| ||| |||| |||||||||||| | |||| ||||||||| || |||||||| |||||||| |
|
|
| T |
42506060 |
aataggagcgggtctcactagaaacattaaattgcatcgcttatgtg--taagagagtgaataaaatactgtaatattatttaatatagtaaaatatctt |
42506157 |
T |
|
| Q |
332 |
tcagagtttgtc |
343 |
Q |
| |
|
|| || |||||| |
|
|
| T |
42506158 |
tcggaatttgtc |
42506169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 74 - 491
Target Start/End: Complemental strand, 42911408 - 42910991
Alignment:
| Q |
74 |
gaaagtattgaagcagaagtgagaat-acaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaa |
172 |
Q |
| |
|
||||| || ||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
42911408 |
gaaagcatcgaagcagaagtgaaaaacacaaagcttctgtgtgtgtagaagtgtgtgagagaaaaaatagagtgttgagtaaatccagagagtgtggaaa |
42911309 |
T |
|
| Q |
173 |
aaatacaccgggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgggtctc-atagaaacactatattgtatctc |
271 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||| | ||||||||||||||| |||||| ||| |||||| | ||||||||||||||||||| |
|
|
| T |
42911308 |
aaatacactgggtgggtatcatctctataacttcttggtgctataaaataatagcattagaatagaagtaggtctcaagggaaacactatattgtatctt |
42911209 |
T |
|
| Q |
272 |
ttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgtcccgtggtttttccctcggtattagaggg |
371 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42911208 |
ttgtgtgtgtgagagagtggagagaatattgtaatattcttaaatatagtggaatat-tttcggagtttgtcccgtggtttttccctcggtattagaggg |
42911110 |
T |
|
| Q |
372 |
ttttccacgttaaatattggtattcattttttatcgctaccgctgcgctacaaaatccaatctcttttggatttttgaattttaatttacacttgagtta |
471 |
Q |
| |
|
||||||| ||||||||||||| |||| ||||||||| | |||||||||| ||| ||| ||||||||||||||||| ||||||||||| |||||| |||| |
|
|
| T |
42911109 |
ttttccatgttaaatattggtgttca-tttttatcgttgccgctgcgctgcaagatctaatctcttttggattttaaaattttaatttccacttgcgtta |
42911011 |
T |
|
| Q |
472 |
agctcgtcgagcccaacaaa |
491 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
42911010 |
agctcgtcgagcccaacaaa |
42910991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 74 - 489
Target Start/End: Complemental strand, 29107291 - 29106878
Alignment:
| Q |
74 |
gaaagtattgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaa |
173 |
Q |
| |
|
||||| || |||||||||||| |||||||||||||| ||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
29107291 |
gaaagcatcgaagcagaagtggaaatacaaagcttctctgtatgtagaagtgtgtgagagaaaaaatag--tgttgagtaaatccagagagtgtgggaaa |
29107194 |
T |
|
| Q |
174 |
aatacaccgggtggg-tatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgggtctcatag-aaacactatattgtatctc |
271 |
Q |
| |
|
|||||| ||||||| |||||||| ||||||||||||||| | |||||||||||||| |||||| ||| ||||||| | ||||||||| ||||||||| |
|
|
| T |
29107193 |
aatacattgggtggggtatcatctttataacttctaggtgctaaaaaataatagcattagaatagaagtaggtctcacgggaaacactat-ttgtatctc |
29107095 |
T |
|
| Q |
272 |
ttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgtcccgtggtttttccctcggtattagaggg |
371 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29107094 |
ttgtgtgtgtaagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagaggg |
29106995 |
T |
|
| Q |
372 |
ttttccacgttaaatattggtattcattttttatcgctaccgctgcgctacaaaatccaatctcttttggatttttgaattttaatttacacttgagtta |
471 |
Q |
| |
|
||||||||||||||||||||| |||| |||||| ||||||||||||||| ||| ||||||||| ||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
29106994 |
ttttccacgttaaatattggtgttca-tttttaacgctaccgctgcgctgcaagatccaatcttttttggattttggaattttaatttacacttgcatta |
29106896 |
T |
|
| Q |
472 |
agctcgtcgagcccaaca |
489 |
Q |
| |
|
||||| |||| ||||||| |
|
|
| T |
29106895 |
agctcctcgatcccaaca |
29106878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 306 - 463
Target Start/End: Complemental strand, 38997320 - 38997164
Alignment:
| Q |
306 |
tattcttaaatatagtggaatatctttcagagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtattcattttttat |
405 |
Q |
| |
|
||||||| |||||| |||| ||| ||| ||||||||||||| ||||||| ||| ||||||||||||||| |||| |||||||| | ||| |||||||| |
|
|
| T |
38997320 |
tattctttaatataatggattattttttggagtttgtcccgtagtttttcgttcgatattagagggttttcgacgtaaaatattgctgttc-ttttttat |
38997222 |
T |
|
| Q |
406 |
cgctaccgctgcgctacaaaatccaatctcttttggatttttgaattttaatttacac |
463 |
Q |
| |
|
| | || ||| || ||| || ||| ||||||||||| | |||||||||||||||| |
|
|
| T |
38997221 |
cattgtcgatgcacttcaagatttaatttcttttggattctggaattttaatttacac |
38997164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 399 - 490
Target Start/End: Complemental strand, 38994789 - 38994698
Alignment:
| Q |
399 |
tttttatcgctaccgctgcgctacaaaatccaatctcttttggatttttgaattttaatttacacttgagttaagctcgtcgagcccaacaa |
490 |
Q |
| |
|
|||||||| ||||||||| || ||| ||||||| | ||||| |||| ||||||||||||||||| | ||||| ||||| |||||||||| |
|
|
| T |
38994789 |
tttttatcattaccgctgcactgcaagatccaattttgtttgggttttggaattttaatttacactagcattaagatcgtcaagcccaacaa |
38994698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 6e-64; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 84 - 271
Target Start/End: Original strand, 51302118 - 51302306
Alignment:
| Q |
84 |
aagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgg |
183 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
51302118 |
aagcataagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgtgaggaaaaatagagtattgagtaaatccagagagtgtggataaaatacaccgg |
51302217 |
T |
|
| Q |
184 |
gtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgggtctca-tagaaacactatattgtatctc |
271 |
Q |
| |
|
||||| ||||||||||||||||||||||| | ||||| ||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
51302218 |
gtgggaatcatctctataacttctaggtgctataaaacaattgcattcgaataggagtgggtctcacgggaaacactatattgtatctc |
51302306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 511 - 771
Target Start/End: Original strand, 1525696 - 1525959
Alignment:
| Q |
511 |
tgaatacaaaatagttatatatccttatgaaggtagtattttgggaaaacnnnnnnncaagccaaagaacagg--taacatatcaatcttctcaaagaga |
608 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||||||||| ||| ||| ||||||| ||||||||||| ||||| |||||| |
|
|
| T |
1525696 |
tgaatccaaaatagttataaatccttatgaaggtagtattttgggaaaacagaaa--caacccagagaacagagataacatatcaaaattctccaagaga |
1525793 |
T |
|
| Q |
609 |
gacacacaaaggagaaca--tactagtacaattatta-taatcatgaaaagcata---gtgcaaatcttcttagtagtccttctctaattcttgaaatat |
702 |
Q |
| |
|
|| |||||||||| | | ||| | || |||| || |||| || |||| |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1525794 |
gatacacaaaggatagctggtacaattaatattaataataattattaaaaacataacagtgcaaatcttcttagtagtccttctctaattcttgaaatat |
1525893 |
T |
|
| Q |
703 |
tcattcctccttcgccttcgactcctcggccttcatgttaagctttgccttcttggccttcttgttagc |
771 |
Q |
| |
|
|||| |||||||||||| | ||||| | |||||||| ||||| |||||||| | ||||||||||| |
|
|
| T |
1525894 |
tcatccctccttcgcctcggcctccttgatcttcatgtcaagct---ccttcttgcctttcttgttagc |
1525959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 407 - 490
Target Start/End: Original strand, 51302937 - 51303020
Alignment:
| Q |
407 |
gctaccgctgcgctacaaaatccaatctcttttggatttttgaattttaatttacacttgagttaagctcgtcgagcccaacaa |
490 |
Q |
| |
|
|||||||||||||| ||| ||||||||| ||||||||||| |||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
51302937 |
gctaccgctgcgctgcaagatccaatctgttttggattttgaaattttaatttacacttgcattaagctcgtcgatcccaacaa |
51303020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 357 - 415
Target Start/End: Original strand, 51302304 - 51302361
Alignment:
| Q |
357 |
ctcggtattagagggttttccacgttaaatattggtattcattttttatcgctaccgct |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
51302304 |
ctcggtattagagggttttccacgttaaatattggtgttca-tttttatcgctaccgct |
51302361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 6e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 306 - 489
Target Start/End: Complemental strand, 2100379 - 2100199
Alignment:
| Q |
306 |
tattcttaaatatagtggaatatctttcagagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtattcattttttat |
405 |
Q |
| |
|
||||||| ||||||||||||||| |||| ||||||| ||| ||||||| ||| ||||| |||||||||||| |||||||||| | |||| |||||| |
|
|
| T |
2100379 |
tattctttaatatagtggaatatttttcggagtttgcccc---gtttttcgctcattattaaagggttttccaccttaaatattgatgttca-attttat |
2100284 |
T |
|
| Q |
406 |
cgctaccgctgcgctacaaaa-tccaatctcttttggatttttgaattttaatttacacttgagttaagctcgtcgagcccaaca |
489 |
Q |
| |
|
| || || || ||| ||||| || |||||||| || ||||| ||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2100283 |
cattatcgttgtgctgcaaaattcaaatctcttatgaattttggaattttaatttacacttgtgttaagctcgtcgagcccaaca |
2100199 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 265 - 312
Target Start/End: Complemental strand, 2100771 - 2100724
Alignment:
| Q |
265 |
gtatctcttgtgtgtgtaagagagtgaagagaatattgtaatattctt |
312 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
2100771 |
gtatctcttgtgtatgtaagagagtggagagaatattgtaatattctt |
2100724 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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