View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9838_low_22 (Length: 228)
Name: NF9838_low_22
Description: NF9838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9838_low_22 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 16849847 - 16849626
Alignment:
| Q |
7 |
gaaatcagtgttatatgggatgaaattgaatcttttttggaattgtattgtgataaatattgctgttgtgttttcagagagctgcaataggaattaaatg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16849847 |
gaaatcagtgttatatgggatgaaattgaatcttttatggaattgtattgtgataaatattgctgttgtgttttcagagagctgcaataggaattaaatg |
16849748 |
T |
|
| Q |
107 |
aagtaatctcgatggtctccggtggcgggttttcgatgccaagggccaagtgagtatgacaataaaatgatattttgatttaatattttatcagtttctt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| || |||||| |
|
|
| T |
16849747 |
aagtaatctcgatggtctccggtggcgggttttcgatgccaagggccagatgagtatgacaataaaatgatattttgatgtaatattttaccaatttctt |
16849648 |
T |
|
| Q |
207 |
cttctttgaagtatgtggttgt |
228 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
16849647 |
cttctttgaagtatatggttgt |
16849626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 25804775 - 25804568
Alignment:
| Q |
7 |
gaaatcagtgttatatgggatgaaattgaatcttttttggaattgtattgtgataaatattgctgttgtgttttcagagagctgcaataggaattaaatg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
25804775 |
gaaatcagtgttatatgggatgaaattgaatcttttatggaattgtattgtgataaatattgttgtt--------------ctgcaataggaattaaatg |
25804690 |
T |
|
| Q |
107 |
aagtaatctcgatggtctccggtggcgggttttcgatgccaagggccaagtgagtatgacaataaaatgatattttgatttaatattttatcagtttctt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
25804689 |
aagtaatctcgatggtctccggtggcgggttttcgatgccaagggccaggtgagtatgacaataaaatgatattttgatgtaatattttatcagtttctt |
25804590 |
T |
|
| Q |
207 |
cttctttgaagtatgtggttgt |
228 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
25804589 |
cttctttgaagtatgtggttgt |
25804568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 107
Target Start/End: Complemental strand, 18361687 - 18361587
Alignment:
| Q |
7 |
gaaatcagtgttatatgggatgaaattgaatcttttttggaattgtattgtgataaatattgctgttgtgttttcagagagctgcaataggaattaaatg |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
18361687 |
gaaatcagtgttatatgggatgaaattgaatcttttttggaattgtattgtaataaatgttgctgttgtgttttcagagagctgcaacatgaattaaatg |
18361588 |
T |
|
| Q |
107 |
a |
107 |
Q |
| |
|
| |
|
|
| T |
18361587 |
a |
18361587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 124 - 228
Target Start/End: Original strand, 19880818 - 19880920
Alignment:
| Q |
124 |
tccggtggcgggttttcgatgccaagggccaagtgagtatgacaataaaatgat-attttgatttaatattttatcagtttcttcttctttgaagtatgt |
222 |
Q |
| |
|
|||||||||||||| || |||||||||| || |||||| ||||||||||||||| |||||||| ||||||||||||||| |||||||||||| ||||| |
|
|
| T |
19880818 |
tccggtggcgggttctcaatgccaagggtcaggtgagtgtgacaataaaatgatgattttgatgtaatattttatcagt---ttcttctttgaattatgt |
19880914 |
T |
|
| Q |
223 |
ggttgt |
228 |
Q |
| |
|
|||||| |
|
|
| T |
19880915 |
ggttgt |
19880920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 18361592 - 18361538
Alignment:
| Q |
171 |
aaatgatattttgatttaatattttatcagtttcttcttctttgaagtatgtggttgt |
228 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
18361592 |
aaatgatattttgatgtaatattttatcagtttct---tctttaaagtatgtggttgt |
18361538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 19880783 - 19880818
Alignment:
| Q |
7 |
gaaatcagtgttatatgggatgaaattgaatctttt |
42 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
|
|
| T |
19880783 |
gaaattagtgttatatgggatgaaattgaatctttt |
19880818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 159
Target Start/End: Original strand, 37350905 - 37350992
Alignment:
| Q |
72 |
ttgtgttttcagagagctgcaataggaattaaatgaagtaatctcgatggtctccggtggcgggttttcgatgccaagggccaagtga |
159 |
Q |
| |
|
||||||||||||||||||||| ||||||||| | | ||| || || || |||||||||||||| || |||||||||||||| |||| |
|
|
| T |
37350905 |
ttgtgttttcagagagctgcagctggaattaaacgcattaaacttgacgggctccggtggcgggtatttgatgccaagggccaggtga |
37350992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University