View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9838_low_23 (Length: 227)
Name: NF9838_low_23
Description: NF9838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9838_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 26465567 - 26465385
Alignment:
| Q |
1 |
aaagcaatgatagtttctctctgggtcagaaacttggcaaacacgtgatctttcaaggaggttcatacggattgcagctccagaaatcttcccattcttg |
100 |
Q |
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| T |
26465567 |
aaagcaatgatagtttctctccgggtcagaaacttggcaaacacgagatctttcaaggaggtacgtacggatcgcagctccagaaatcttcccattcttg |
26465468 |
T |
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| Q |
101 |
tcaaattgaatttcaacaaacttaccaaaacgactgccaaaaaatccaataattttgtaagacaaactcaaatggaaattatg |
183 |
Q |
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| T |
26465467 |
tcaaattgaatttcaacaaacttaccaaaacgactgccaaaaaattcaataattttgtaaaacaaattcaaatggaaattatg |
26465385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 35 - 137
Target Start/End: Original strand, 29902522 - 29902624
Alignment:
| Q |
35 |
tggcaaacacgtgatctttcaaggaggttcatacggattgcagctccagaaa-tcttcccattcttgtcaaattgaatttcaacaaacttaccaaaacga |
133 |
Q |
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| T |
29902522 |
tggcaaacacgtgatctttccagcaggtaagttctgatagcagctccagaaattcttccc-ttctggtcaaattgaatctccacaaacttaccaaaacga |
29902620 |
T |
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| Q |
134 |
ctgc |
137 |
Q |
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|||| |
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| T |
29902621 |
ctgc |
29902624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 13858240 - 13858289
Alignment:
| Q |
1 |
aaagcaatgatagtttctctctgggtcagaaacttggcaaacacgtgatc |
50 |
Q |
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| T |
13858240 |
aaagcaatgataatttctctcaggatcagaaacttgacaaacacgtgatc |
13858289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 3952545 - 3952509
Alignment:
| Q |
101 |
tcaaattgaatttcaacaaacttaccaaaacgactgc |
137 |
Q |
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| T |
3952545 |
tcaaactgaatttcaacaaacttcccaaaacgactgc |
3952509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 47694342 - 47694225
Alignment:
| Q |
20 |
tctgggtcagaaacttggcaaacacgtgatctttcaaggaggttcatacggattgcagctccagaaatcttcccattcttgtcaaattgaatttcaacaa |
119 |
Q |
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||||||||| |||||||||||| |||||||| ||||| |||| | |||| || || || || || || | ||| |||| |||||||| || ||||||| |
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| T |
47694342 |
tctgggtcattaacttggcaaacccgtgatctctcaagaaggtacgtacgaatggctgcgcctgagattcttccactcttatcaaattggatctcaacaa |
47694243 |
T |
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| Q |
120 |
acttaccaaaacgactgc |
137 |
Q |
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| T |
47694242 |
acttaccaaaacgactgc |
47694225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 52154454 - 52154511
Alignment:
| Q |
80 |
ccagaaatcttcccattcttgtcaaattgaatttcaacaaacttaccaaaacgactgc |
137 |
Q |
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||||||||| | || || ||||||||||| || |||||||| |||||||||||||||| |
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| T |
52154454 |
ccagaaatccttcccttgttgtcaaattgtatctcaacaaatttaccaaaacgactgc |
52154511 |
T |
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