View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9838_low_25 (Length: 221)
Name: NF9838_low_25
Description: NF9838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9838_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 26384199 - 26384390
Alignment:
| Q |
18 |
atagtttccttcattgaaccatctttcaacactctctctatcataggttattcctgttgacaatgtcacaggatctttcatcaaatcaagagttatagga |
117 |
Q |
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| T |
26384199 |
atagtttccttcattgaaccatctttcaacactctctctatcataggttattcctgttgacaatgtcacaggatctttcatcaaatcaagagttatagga |
26384298 |
T |
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| Q |
118 |
cacctaaattgatttggaaccactacctccatgtttggttttccacctttgttg-tttttgttgttcttccttcttccccaacctaacacca |
208 |
Q |
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| T |
26384299 |
cacctaaattgatttggaaccactacctccatgtttggttttccacctttgttgttttttgttgttcttccttcttccccaacctaacacca |
26384390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 21036545 - 21036355
Alignment:
| Q |
18 |
atagtttccttcattgaaccatctttcaacactctctctatcataggttattcctgttgacaatgtcacaggatctttcatcaaatcaagagttatagga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||| |
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| T |
21036545 |
atagtttccttcattgaaccatctttcaacactctctctatcataggttattcctgttgacaatgtcacaggatctttcatcaattcaagtgtaatagga |
21036446 |
T |
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| Q |
118 |
cacctaaattgatttggaaccactacctccatgtttggttttccacctttgttgtttttgttgttcttccttcttccccaacctaacacca |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
21036445 |
cacctaaattgatttggaaccactacctccatgtttggttttccacctttgttgtttttcttgttcttccttcttccccaacctaacacca |
21036355 |
T |
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