View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9838_low_3 (Length: 840)
Name: NF9838_low_3
Description: NF9838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9838_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 754; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 754; E-Value: 0
Query Start/End: Original strand, 16 - 824
Target Start/End: Complemental strand, 565315 - 564509
Alignment:
| Q |
16 |
taaactactgagcttagaacatggtacggtattgattcaatgactaatgatatggttattgtaaaaattgacatattaattaagagtcataagtatgttt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
565315 |
taaactactgagcttagaacatggtacggtattgattcaatgactaatgatatgcttattgtaaaaattgacatattaattaagagtcatgagtatgttt |
565216 |
T |
|
| Q |
116 |
aattagtaaaggcatgcaagaagaagaaactctcataggtaaattttcttttaatagttggagtagtatcttctctatcaaagattacaataataagaga |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
565215 |
aattagtaaaggcatgcaagaagaagaaactctcataggtaaattttcttttaatagctggagtagtatcttctctatcaaagattacaataataagaga |
565116 |
T |
|
| Q |
216 |
aagacaaagaggacaaaattcttgaaaagatcaagagtgaatcatggatccaattaaggattcttaaatcgctcacaacaaaaattaatggtattgtata |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
565115 |
aagacaaagaggacaaaattcttgaaaagatcaagagtgaatcgtggatccaattaaggattcttaaatcgctcacaacaagaattaatggtattgtata |
565016 |
T |
|
| Q |
316 |
ttatatactatcaaggagtgtaaattactcttgtttacactatcatatgtacaacatgacaactagccgtttgttttgttcttgtcctaataatcctatt |
415 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||| |||| |
|
|
| T |
565015 |
ttatatactatcatggagtgtaaattactcttgtttacactatcatatgtacaacatgacaactagccgtttgtt--gttcttgtcttaattatcttatt |
564918 |
T |
|
| Q |
416 |
taattaaccaaatcaaccttccattaacacagatcagagcctaaactaatcaaatttccatggaaagaaaaacacacattgctgtggtttcagtccccat |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
564917 |
taattaaccaaatcaaccttccattaacacggatcagagcctaaactaatcaaatttccatggaaagaaaaacacacattgctgtggtttcagtccccat |
564818 |
T |
|
| Q |
516 |
tgtgagtcatcaaatagcaatttctgagttcatcaagaaactccttaatcttcatcctaacaagtttcacatcaccttaatcattccagtactagattca |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
564817 |
tgtgagtcatcaaatagcaatttctgagttcatcaagaaactccttaatcttcatcctaacaagtttcacatcaccttaatcattccagtactagattca |
564718 |
T |
|
| Q |
616 |
ctttccaatgcttccaaatccattattgcttctctttcttctctcaatgtagataccattgttcttccaccaatcaacttgccaccacaaactgtcccta |
715 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
564717 |
ctttccaatgcttccaaatccattattgcttctctttcttctctcaatgtagataccattgttcttccaccaatcaacttgccaccacaaactgtcccta |
564618 |
T |
|
| Q |
716 |
cactcaaacttcctctttcaatgtctctaactatgccatctatcattgatgcattgaaaacaaaaacatcaaaactagttgctataatagctgattattt |
815 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
564617 |
cactcaaacttcctctttcaatgtctctaactatgccatatatcattgatgcattgaaaacaaaaacatcaaaactagttgctataatagctgattattt |
564518 |
T |
|
| Q |
816 |
tgcctatga |
824 |
Q |
| |
|
||||||||| |
|
|
| T |
564517 |
tgcctatga |
564509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 455 - 510
Target Start/End: Complemental strand, 874194 - 874139
Alignment:
| Q |
455 |
cctaaactaatcaaatttccatggaaagaaaaacacacattgctgtggtttcagtc |
510 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||| |||||| |||| |
|
|
| T |
874194 |
cctaaactaatcaaatttccatggatagaaaaacattcattgctttggtttaagtc |
874139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University