View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9838_low_7 (Length: 394)

Name: NF9838_low_7
Description: NF9838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9838_low_7
NF9838_low_7
[»] chr5 (3 HSPs)
chr5 (1-246)||(28532784-28533029)
chr5 (244-362)||(28533069-28533187)
chr5 (32-77)||(41900503-41900548)
[»] chr3 (3 HSPs)
chr3 (252-362)||(51763081-51763191)
chr3 (30-88)||(51763388-51763446)
chr3 (31-88)||(51113195-51113252)
[»] chr6 (12 HSPs)
chr6 (246-320)||(6587982-6588056)
chr6 (30-88)||(6593929-6593987)
chr6 (118-215)||(6588144-6588241)
chr6 (32-88)||(6423907-6423963)
chr6 (34-87)||(6410699-6410752)
chr6 (330-376)||(14810035-14810081)
chr6 (34-88)||(19633104-19633158)
chr6 (30-87)||(6417092-6417149)
chr6 (31-80)||(6596241-6596290)
chr6 (48-89)||(7132323-7132364)
chr6 (48-89)||(7135246-7135287)
chr6 (48-89)||(7138169-7138210)
[»] chr4 (5 HSPs)
chr4 (30-89)||(553759-553818)
chr4 (329-376)||(1537252-1537299)
chr4 (30-85)||(21833278-21833333)
chr4 (324-376)||(1547374-1547426)
chr4 (283-376)||(53759968-53760058)
[»] chr7 (5 HSPs)
chr7 (30-89)||(10615713-10615772)
chr7 (327-376)||(15091285-15091334)
chr7 (29-89)||(10169047-10169107)
chr7 (29-89)||(10176572-10176632)
chr7 (344-376)||(10616213-10616245)
[»] chr8 (2 HSPs)
chr8 (31-75)||(32151969-32152013)
chr8 (39-87)||(34935986-34936034)
[»] chr1 (2 HSPs)
chr1 (30-94)||(7555198-7555262)
chr1 (32-89)||(19467428-19467485)


Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 28532784 - 28533029
Alignment:
Q  1 tctgcgataagaaataggttaacaaagccggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgctgggaagcggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28532784 tctgcgataagaaataggttaacaaagccggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgctgggaagcggt 28532883  T
Q  101 taccaacgtttgggagtttgagtgaagtgaatttgaacgacgagaaacgagagatttggcagagaaggtcgtcgaggttgtgaccgagatagcgagagag 200  Q
    ||||||||||||| |||||||||||| ||| |||||| |||| ||||   ||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  28532884 taccaacgtttggaagtttgagtgaaatgattttgaatgacgggaaatctgagatttggcagagaaggtcgtcgaggttgttacctagatagcgagagag 28532983  T
Q  201 attgagggaattgagatgggtgaaccttttgaagaggctacgtagg 246  Q
    || |||| |||||||||||||||||||||||||||||||| |||||    
T  28532984 atcgaggaaattgagatgggtgaaccttttgaagaggctaagtagg 28533029  T

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Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 244 - 362
Target Start/End: Original strand, 28533069 - 28533187
Alignment:
Q  244 aggcggccggtgatggagaggaaccgtttggatacggtggagagagaactcaagctgcgacggttgttgttttcgtccataccgtcgttgatgatgaatc 343  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28533069 aggcgtccggtgatggagaggaaccgtttggatacggtggagagagaactcaagttgcgacggttgttgttttcgtccataccgtcgttgatgatgaatc 28533168  T
Q  344 tgaatatacattcccaaca 362  Q
    |||| ||||||||||||||    
T  28533169 tgaagatacattcccaaca 28533187  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 41900548 - 41900503
Alignment:
Q  32 aacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcg 77  Q
    ||||||||| |||||||||||||||||| ||||  |||||||||||    
T  41900548 aacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcg 41900503  T

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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 252 - 362
Target Start/End: Complemental strand, 51763191 - 51763081
Alignment:
Q  252 ggtgatggagaggaaccgtttggatacggtggagagagaactcaagctgcgacggttgttgttttcgtccataccgtcgttgatgatgaatctgaatata 351  Q
    |||||||||||||||| ||||||| ||| ||||||||||| ||||| ||||||||||||| | ||||||   | | | ||||||||||||| |||| |||    
T  51763191 ggtgatggagaggaactgtttggaaacgatggagagagaattcaagttgcgacggttgttttcttcgtcatcatcattgttgatgatgaatttgaagata 51763092  T
Q  352 cattcccaaca 362  Q
     ||||||||||    
T  51763091 gattcccaaca 51763081  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 51763446 - 51763388
Alignment:
Q  30 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttg 88  Q
    ||||||||||| ||| |||||||||||||| |||||||||||| ||||||| |||||||    
T  51763446 ggaacaagtgagagatgtcaaagttgtaatcttttgtgaaaaaactcgcaacccatttg 51763388  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 51113252 - 51113195
Alignment:
Q  31 gaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttg 88  Q
    |||||||||| |||||||| ||||||||| ||||  || |||||||||||||||||||    
T  51113252 gaacaagtgagagaggtcagagttgtaatattttccgagaaagctcgcaatccatttg 51113195  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 320
Target Start/End: Complemental strand, 6588056 - 6587982
Alignment:
Q  246 gcggccggtgatggagaggaaccgtttggatacggtggagagagaactcaagctgcgacggttgttgttttcgtc 320  Q
    |||| ||||||||| ||||||| | |||||||||| |||||||||| ||| |||| |||||||||||||||||||    
T  6588056 gcggtcggtgatggcgaggaactgcttggatacggcggagagagaaatcatgctgtgacggttgttgttttcgtc 6587982  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 6593987 - 6593929
Alignment:
Q  30 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttg 88  Q
    ||||||| |||||||||||||||||||||| |||||||| ||| ||||||| |||||||    
T  6593987 ggaacaattgaaagaggtcaaagttgtaatcttttgtgagaaaactcgcaaaccatttg 6593929  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 215
Target Start/End: Complemental strand, 6588241 - 6588144
Alignment:
Q  118 ttgagtgaagtgaatttgaacgacgagaaacgagagatttggcagagaaggtcgtcgaggttgtgaccgagatagcgagagagattgagggaattgag 215  Q
    ||||||||||||| ||| || |  | |||||||||||||||||| ||||||||||||||||  | ||||  ||| || ||||||||||||||| ||||    
T  6588241 ttgagtgaagtgattttcaatgttgggaaacgagagatttggcaaagaaggtcgtcgaggtcataaccgctatatcgcgagagattgagggaagtgag 6588144  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 6423907 - 6423963
Alignment:
Q  32 aacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttg 88  Q
    ||||||||| ||||||||||||||| |||||||| || ||||||||||| |||||||    
T  6423907 aacaagtgagagaggtcaaagttgttatgttttgggagaaagctcgcaacccatttg 6423963  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 6410699 - 6410752
Alignment:
Q  34 caagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccattt 87  Q
    |||||||||||||||||||||||||||||||| || ||| || |||| ||||||    
T  6410699 caagtgaaagaggtcaaagttgtaatgttttgggagaaaacttgcaacccattt 6410752  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 330 - 376
Target Start/End: Original strand, 14810035 - 14810081
Alignment:
Q  330 gttgatgatgaatctgaatatacattcccaacactcatcaggtaaat 376  Q
    ||||||||||||||| || | || |||||||||||||||||||||||    
T  14810035 gttgatgatgaatctaaagacacgttcccaacactcatcaggtaaat 14810081  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 19633104 - 19633158
Alignment:
Q  34 caagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttg 88  Q
    ||||||| ||||||||||||||||||| |||  || ||||||||||| |||||||    
T  19633104 caagtgagagaggtcaaagttgtaatgctttcggagaaagctcgcaacccatttg 19633158  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 6417092 - 6417149
Alignment:
Q  30 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccattt 87  Q
    ||||||||||| |||||||||||||||| | ||||| || |||||||| || ||||||    
T  6417092 ggaacaagtgagagaggtcaaagttgtattcttttgggagaaagctcgtaacccattt 6417149  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 6596290 - 6596241
Alignment:
Q  31 gaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaa 80  Q
    |||||||||| ||||||||||||||| |||||||| || ||| |||||||    
T  6596290 gaacaagtgagagaggtcaaagttgttatgttttgggagaaaactcgcaa 6596241  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 7132323 - 7132364
Alignment:
Q  48 caaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 89  Q
    |||||||||||||||||| || ||||||||||| ||||||||    
T  7132323 caaagttgtaatgttttgggagaaagctcgcaacccatttgc 7132364  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 7135246 - 7135287
Alignment:
Q  48 caaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 89  Q
    |||||||||||||||||| || ||||||||||| ||||||||    
T  7135246 caaagttgtaatgttttgggagaaagctcgcaacccatttgc 7135287  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 7138169 - 7138210
Alignment:
Q  48 caaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 89  Q
    |||||||||||||||||| || ||||||||||| ||||||||    
T  7138169 caaagttgtaatgttttgggagaaagctcgcaacccatttgc 7138210  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 553759 - 553818
Alignment:
Q  30 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 89  Q
    |||||| |||| |||||||||||||||||||||||| || ||||||||||| ||||||||    
T  553759 ggaacaggtgagagaggtcaaagttgtaatgttttgggagaaagctcgcaacccatttgc 553818  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 376
Target Start/End: Complemental strand, 1537299 - 1537252
Alignment:
Q  329 cgttgatgatgaatctgaatatacattcccaacactcatcaggtaaat 376  Q
    ||||| ||| ||||||||||| ||||||||||||||||||||||||||    
T  1537299 cgttgttgaggaatctgaatacacattcccaacactcatcaggtaaat 1537252  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 21833333 - 21833278
Alignment:
Q  30 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccat 85  Q
    ||||||||||| |||||||||||| ||||||||||||| |||| ||||||| ||||    
T  21833333 ggaacaagtgagagaggtcaaagtagtaatgttttgtgcaaaaactcgcaacccat 21833278  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 324 - 376
Target Start/End: Complemental strand, 1547426 - 1547374
Alignment:
Q  324 accgtcgttgatgatgaatctgaatatacattcccaacactcatcaggtaaat 376  Q
    ||||||| ||||||||||| |||| ||| ||||||||||||| ||||||||||    
T  1547426 accgtcgatgatgatgaatttgaagatagattcccaacactcgtcaggtaaat 1547374  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 283 - 376
Target Start/End: Complemental strand, 53760058 - 53759968
Alignment:
Q  283 gagagagaactcaagctgcgacggttgttgttttcgtccataccgtcgttgatgatgaatctgaatatacattcccaacactcatcaggtaaat 376  Q
    ||||||||| ||||| || ||||||||||||||| |||| |   || |||||||| || | |||| ||| ||||||| ||||||||||||||||    
T  53760058 gagagagaattcaagttgtgacggttgttgtttttgtcctt---gttgttgatgacgagtttgaagatagattcccagcactcatcaggtaaat 53759968  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 10615713 - 10615772
Alignment:
Q  30 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 89  Q
    ||||||||||| |||||||||||||||||| ||||| || |||||||| || ||||||||    
T  10615713 ggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgc 10615772  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 327 - 376
Target Start/End: Complemental strand, 15091334 - 15091285
Alignment:
Q  327 gtcgttgatgatgaatctgaatatacattcccaacactcatcaggtaaat 376  Q
    ||||||||||||||||||||| |  ||||||||||||||||| |||||||    
T  15091334 gtcgttgatgatgaatctgaagacgcattcccaacactcatcgggtaaat 15091285  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 10169107 - 10169047
Alignment:
Q  29 cggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 89  Q
    |||||||||||| ||||||||||||| |||| ||||| || ||| ||||||| ||||||||    
T  10169107 cggaacaagtgagagaggtcaaagttctaatattttgagagaaaactcgcaacccatttgc 10169047  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 10176632 - 10176572
Alignment:
Q  29 cggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 89  Q
    |||||||||||| ||||||||||||| |||| ||||| || ||| ||||||| ||||||||    
T  10176632 cggaacaagtgagagaggtcaaagttctaatattttgagagaaaactcgcaacccatttgc 10176572  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 10616213 - 10616245
Alignment:
Q  344 tgaatatacattcccaacactcatcaggtaaat 376  Q
    |||| ||||||||||||||||||||||||||||    
T  10616213 tgaagatacattcccaacactcatcaggtaaat 10616245  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 32151969 - 32152013
Alignment:
Q  31 gaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagct 75  Q
    |||||||||| |||||||||||||||||||||||| || ||||||    
T  32151969 gaacaagtgagagaggtcaaagttgtaatgttttgggagaaagct 32152013  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 34936034 - 34935986
Alignment:
Q  39 gaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccattt 87  Q
    |||||| |||||||||||||| |||||||| ||| ||||||| ||||||    
T  34936034 gaaagatgtcaaagttgtaatattttgtgagaaaactcgcaaaccattt 34935986  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 7555198 - 7555262
Alignment:
Q  30 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgctggga 94  Q
    |||||||||||  ||||| ||||||||||| ||||| || ||||||||||||||| |||| ||||    
T  7555198 ggaacaagtgagtgaggttaaagttgtaatattttgggagaaagctcgcaatccaattgcaggga 7555262  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 19467485 - 19467428
Alignment:
Q  32 aacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 89  Q
    ||||||||| |||||||||||||||||| ||||| |  ||| ||||||| ||||||||    
T  19467485 aacaagtgagagaggtcaaagttgtaatattttgagtgaaaactcgcaacccatttgc 19467428  T

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