View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9838_low_8 (Length: 360)
Name: NF9838_low_8
Description: NF9838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9838_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 346
Target Start/End: Complemental strand, 29922906 - 29922578
Alignment:
| Q |
18 |
aattgcacctcaagagatcagcagtacaaaatcctcacttcaccctaatcacggggcacgaaaaatttatccctggagagtcattctatggtattgacga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29922906 |
aattgcacctcaagagatcagcagtacaaaatcctcacttcaccctaatcatggggcacgaaaaatttatccctggagagtcattctatggtattgacga |
29922807 |
T |
|
| Q |
118 |
tgaatctgagagggattacaatctcgttccataccctataagtcgtttactagataacccgtcattcacccttcttttagatgatccttacaatagtgtc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29922806 |
tgaatctgagagggattacaatctcgttccataccctataagtcgtttactagataacccgtcattcacccttcttttagatgatccttacaatagtgtc |
29922707 |
T |
|
| Q |
218 |
acttactatcatgtcaacaacgacatatgctctcgtataattggttcatgcaatggattgatctgtttggctgagacttctttaacccatgatgggtatc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29922706 |
acttactatcatgtcaacaacgacatatgctctcgtataattggttcatgcaatggattgatttgtttggctgagacttctttaacccatgatgggtatc |
29922607 |
T |
|
| Q |
318 |
aagagaattggcgtagagagtattggttc |
346 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
29922606 |
aagagaattggcgtagagagtattggttc |
29922578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 290
Target Start/End: Original strand, 29880678 - 29880724
Alignment:
| Q |
244 |
atgctctcgtataattggttcatgcaatggattgatctgtttggctg |
290 |
Q |
| |
|
||||||||||||| ||||| | |||||||| |||||||||||||||| |
|
|
| T |
29880678 |
atgctctcgtatagttggtacctgcaatggtttgatctgtttggctg |
29880724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 29074281 - 29074334
Alignment:
| Q |
18 |
aattgcacctcaagagatcagcagtacaaaatcctcacttcaccctaatcacgg |
71 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||| |||||||| ||||||||| |
|
|
| T |
29074281 |
aattgcatctcaagagatcagcaacacaaaatccacacttcacagtaatcacgg |
29074334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 183
Target Start/End: Original strand, 3565026 - 3565105
Alignment:
| Q |
104 |
tatggtattgacgatgaatctgagagggattacaatctcgttccataccctataagtcgtttactagataacccgtcatt |
183 |
Q |
| |
|
||||||| |||||||||| |||||| ||||||| | || ||||||| |||||| ||||||||| |||||||||||||| |
|
|
| T |
3565026 |
tatggtagtgacgatgaagctgagattgattacagtatcattccatatcctatacctcgtttactcgataacccgtcatt |
3565105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 290
Target Start/End: Original strand, 3625181 - 3625224
Alignment:
| Q |
247 |
ctctcgtataattggttcatgcaatggattgatctgtttggctg |
290 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||| |||||||||| |
|
|
| T |
3625181 |
ctctcgtatagttggttcctgcaatggattgatatgtttggctg |
3625224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 3624970 - 3625022
Alignment:
| Q |
18 |
aattgcacctcaagagatcagcagtacaaaatcctcacttcaccctaatcacg |
70 |
Q |
| |
|
||||||||||||||||||||||| || |||||| | |||||| ||||||||| |
|
|
| T |
3624970 |
aattgcacctcaagagatcagcatcacgaaatccactcttcacactaatcacg |
3625022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University