View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9838_low_9 (Length: 349)
Name: NF9838_low_9
Description: NF9838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9838_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 19 - 343
Target Start/End: Complemental strand, 30278060 - 30277745
Alignment:
| Q |
19 |
gatttacctatcagagaattttctgaagtttcttctcacttgtcactagtcaaaacattctatcctcatgcagacacagaataagacagacacacatgag |
118 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30278060 |
gatttacctatcagagaattttctaaagtttcttctcacttgtcactagtcaaaacattctatcctcatgcagacacagaataagacagacacac----- |
30277966 |
T |
|
| Q |
119 |
tagagtagaatacaaaatggacgtagaataaaacaaaggacatgtacatgcaaaatataaaacaaaagcagttgttaattgacgaatatatcaatgaaca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30277965 |
----gtagaatacaaaatggacgtagaataaaacaaaggacatgtacatgcaaaatataaaacaaaagcagttgttaattgacgaatatatcaatgaaca |
30277870 |
T |
|
| Q |
219 |
agtattgattcttacaatgaaataaacctcagcggaaatacccatgtcttataaaacaacctaggaacagaaccttcaaaaaaccatataatgaatttct |
318 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30277869 |
agtattgattcttacaatgaaataagcctcagcggaaatacccatgtcttataaaacaacctaggaacagaaccttcaaaaaaccatataatgaatttct |
30277770 |
T |
|
| Q |
319 |
ttcttcacttttcattaacaccaaa |
343 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
30277769 |
ttcttcacttttcattaacaccaaa |
30277745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University