View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9839A_high_15 (Length: 397)

Name: NF9839A_high_15
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9839A_high_15
NF9839A_high_15
[»] chr8 (9 HSPs)
chr8 (2-234)||(42032613-42032845)
chr8 (287-397)||(42032899-42033007)
chr8 (125-228)||(34152007-34152110)
chr8 (123-224)||(24604838-24604939)
chr8 (123-228)||(41927021-41927126)
chr8 (131-219)||(32073929-32074017)
chr8 (123-224)||(2074795-2074896)
chr8 (123-228)||(42241217-42241322)
chr8 (123-160)||(38492763-38492800)
[»] chr7 (9 HSPs)
chr7 (123-234)||(46028422-46028533)
chr7 (287-397)||(46028259-46028369)
chr7 (123-224)||(33743473-33743574)
chr7 (296-392)||(19513534-19513631)
chr7 (123-234)||(40188169-40188280)
chr7 (121-210)||(12258374-12258463)
chr7 (123-226)||(33888617-33888720)
chr7 (123-228)||(23176890-23176995)
chr7 (123-179)||(26557861-26557917)
[»] chr1 (10 HSPs)
chr1 (123-234)||(52372671-52372782)
chr1 (126-234)||(25410555-25410663)
chr1 (120-234)||(9644369-9644483)
chr1 (123-224)||(51871204-51871305)
chr1 (123-234)||(44503937-44504048)
chr1 (122-210)||(13297594-13297682)
chr1 (287-346)||(52372835-52372895)
chr1 (123-234)||(40799652-40799763)
chr1 (123-208)||(21926620-21926704)
chr1 (137-217)||(3227649-3227729)
[»] scaffold0329 (1 HSPs)
scaffold0329 (123-234)||(18408-18519)
[»] chr2 (4 HSPs)
chr2 (123-225)||(43411515-43411617)
chr2 (123-217)||(10994433-10994527)
chr2 (123-179)||(41074599-41074655)
chr2 (123-179)||(29682702-29682758)
[»] chr5 (4 HSPs)
chr5 (123-228)||(41650526-41650630)
chr5 (123-221)||(27639444-27639542)
chr5 (126-228)||(33861926-33862027)
chr5 (123-228)||(3465291-3465396)
[»] chr4 (8 HSPs)
chr4 (125-226)||(45068115-45068216)
chr4 (137-234)||(50655057-50655154)
chr4 (123-219)||(24065097-24065193)
chr4 (123-228)||(30251386-30251491)
chr4 (137-228)||(4866794-4866885)
chr4 (123-234)||(23012323-23012434)
chr4 (123-234)||(19469649-19469759)
chr4 (123-204)||(48309635-48309716)
[»] chr3 (8 HSPs)
chr3 (123-216)||(26982031-26982124)
chr3 (123-226)||(2833286-2833393)
chr3 (125-228)||(34213151-34213254)
chr3 (123-224)||(4778033-4778134)
chr3 (123-224)||(41640825-41640926)
chr3 (128-169)||(1762039-1762080)
chr3 (123-179)||(1045409-1045465)
chr3 (181-219)||(31589115-31589153)
[»] chr6 (3 HSPs)
chr6 (120-234)||(51992-52106)
chr6 (123-227)||(9557358-9557462)
chr6 (123-179)||(9755702-9755758)
[»] scaffold0042 (1 HSPs)
scaffold0042 (122-179)||(83255-83312)


Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 2 - 234
Target Start/End: Original strand, 42032613 - 42032845
Alignment:
Q  2 tcgagtttcgtgttgagttggacgtttataatttaacaaaaatagtttgaactacagtcaatttgaatcccaactagacataaaggaaagatgtacataa 101  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  42032613 tcgactttcgtgttgagttggacgtttataatttaacaaaaacagtttgaactacagtcattttgaatcccaactagacataaaggaaagatgtacataa 42032712  T
Q  102 taggctattcattcttttctatggtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtg 201  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  42032713 taggctattcattcttttctgtggtgaatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctacttcctgctccttttatgagtg 42032812  T
Q  202 ggaggtgcaacccgtcctttgttggcaacggta 234  Q
    |||||||||||||||||||||||||||||||||    
T  42032813 ggaggtgcaacccgtcctttgttggcaacggta 42032845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 287 - 397
Target Start/End: Original strand, 42032899 - 42033007
Alignment:
Q  287 ctttgcctctacctatccggactgtcttcttgggtctctccttgcgcttttccttgctgggtgcgctggttgtggcggggcccttttcgggggccatttc 386  Q
    |||||||||||||| ||| | |||||||||||  |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||     
T  42032899 ctttgcctctacctttccagcctgtcttcttg--tctctccttgcgcttttccttgttgggtgcgctggttgtggtggggcccttttcgggggccatttt 42032996  T
Q  387 ggtgttggttt 397  Q
    |||||||||||    
T  42032997 ggtgttggttt 42033007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 125 - 228
Target Start/End: Complemental strand, 34152110 - 34152007
Alignment:
Q  125 gtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtgggaggtgcaacccgtcctttgtt 224  Q
    ||||||||||| |||||||||||||||||||||||| |||||||| |||||   | || |||| | ||| |||||||||||||||||||| |||||||||    
T  34152110 gtggatagagctaaactcttagcttggaagtggttcctggctaagcgccctagcagttcctgcacttttcatgagtgggaggtgcaacccatcctttgtt 34152011  T
Q  225 ggca 228  Q
    ||||    
T  34152010 ggca 34152007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 123 - 224
Target Start/End: Original strand, 24604838 - 24604939
Alignment:
Q  123 tggtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtgggaggtgcaacccgtcctttg 222  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||| ||| | ||| | | |||||||||||||||| ||| |||| ||    
T  24604838 tggtggatagagcgaaactcttagattgaaagtggttcttggctaagtggcctgctagttttttctcttatcatgagtgggaggtgcagcccatcctatg 24604937  T
Q  223 tt 224  Q
    ||    
T  24604938 tt 24604939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 123 - 228
Target Start/End: Original strand, 41927021 - 41927126
Alignment:
Q  123 tggtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtgggaggtgcaacccgtcctttg 222  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||| ||| | || |||||  || |||||||||||| |||| ||| |||| ||    
T  41927021 tggtggatagagcgaatctcttagcttggaagtggttcctggctaagtgccgtgcaaattcctgctttttctatgagtgggagatgcaccccttcctgtg 41927120  T
Q  223 ttggca 228  Q
    ||||||    
T  41927121 ttggca 41927126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 131 - 219
Target Start/End: Complemental strand, 32074017 - 32073929
Alignment:
Q  131 agagcgaaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtgggaggtgcaacccgtcct 219  Q
    |||| ||||||||||| ||||||||| ||  |||||||||| ||| ||| || ||||||||||||||||||||||| ||| ||||||||    
T  32074017 agagtgaaactcttagtttggaagtgatttctggctaagtgtcctactagttcctgctccttttatgagtgggaggcgcagcccgtcct 32073929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 123 - 224
Target Start/End: Complemental strand, 2074896 - 2074795
Alignment:
Q  123 tggtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtgggaggtgcaacccgtcctttg 222  Q
    ||||||||| ||  |||||||||| || ||||| ||||  ||||||||||||||||| || ||| ||  | |||||||||||||||||||||||||| ||    
T  2074896 tggtggatatagttaaactcttagttttgaagttgttccaggctaagtgccctgctagttcctgttctctctatgagtgggaggtgcaacccgtcctgtg 2074797  T
Q  223 tt 224  Q
    ||    
T  2074796 tt 2074795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 123 - 228
Target Start/End: Complemental strand, 42241322 - 42241217
Alignment:
Q  123 tggtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtgggaggtgcaacccgtcctttg 222  Q
    ||||||||| |||||||||||||||||||||||||||| |||| ||| || || ||| || |||| | |    |||||||||||||||||||||||| ||    
T  42241322 tggtggataaagcgaaactcttagcttggaagtggttcctggcgaagcgctctactagttcctgcacttaccttgagtgggaggtgcaacccgtcctgtg 42241223  T
Q  223 ttggca 228  Q
     |||||    
T  42241222 ctggca 42241217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 160
Target Start/End: Complemental strand, 38492800 - 38492763
Alignment:
Q  123 tggtggatagagcgaaactcttagcttggaagtggttc 160  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  38492800 tggtggataaagcgaaactcttagcttgaaagtggttc 38492763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 8e-40; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 123 - 234
Target Start/End: Complemental strand, 46028533 - 46028422
Alignment:
Q  123 tggtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtgggaggtgcaacccgtcctttg 222  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||| |||||||||| ||||||||||||| ||||| |||||    
T  46028533 tggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgtcctgctagtttctactccttttataagtgggaggtgcagcccgttctttg 46028434  T
Q  223 ttggcaacggta 234  Q
    ||||||||||||    
T  46028433 ttggcaacggta 46028422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 287 - 397
Target Start/End: Complemental strand, 46028369 - 46028259
Alignment:
Q  287 ctttgcctctacctatccggactgtcttcttgggtctctccttgcgcttttccttgctgggtgcgctggttgtggcggggcccttttcgggggccatttc 386  Q
    ||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||  |||||| ||||||||||||     
T  46028369 ctttgcctctacctatccaacttgtcttcttgggtctctccttgcgcttttccttgctgggtgtgctggttgtgacggaaccctttccgggggccatttt 46028270  T
Q  387 ggtgttggttt 397  Q
    |||||||||||    
T  46028269 ggtgttggttt 46028259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 123 - 224
Target Start/End: Original strand, 33743473 - 33743574
Alignment:
Q  123 tggtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtgggaggtgcaacccgtcctttg 222  Q
    ||||||| ||||  ||| |||||||||| |||||||||||||||||||||||||||| |  ||| ||  | |||||||||||||||||||||||||| ||    
T  33743473 tggtggacagagttaaaatcttagcttgaaagtggttcttggctaagtgccctgctagtccctgttctctctatgagtgggaggtgcaacccgtcctgtg 33743572  T
Q  223 tt 224  Q
    ||    
T  33743573 tt 33743574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 296 - 392
Target Start/End: Original strand, 19513534 - 19513631
Alignment:
Q  296 tacctatccggactgtcttcttgggtctctccttgcgc-ttttccttgctgggtgcgctggttgtggcggggcccttttcgggggccatttcggtgtt 392  Q
    ||||||||||  |||||||||||||||||||||||||| ||||||||| |||||||||| | | ||||||| ||||||  ||||||| ||| ||||||    
T  19513534 tacctatccgacctgtcttcttgggtctctccttgcgctttttccttgttgggtgcgcttggtatggcgggtccctttctgggggccttttgggtgtt 19513631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 123 - 234
Target Start/End: Complemental strand, 40188280 - 40188169
Alignment:
Q  123 tggtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtgggaggtgcaacccgtcctttg 222  Q
    ||||||||| ||| |||||| |||||||||||||||||||| ||||||||||||||| ||  ||| | | | |||||| ||||||||| | |||| | ||    
T  40188280 tggtggataaagcaaaactcatagcttggaagtggttcttgcctaagtgccctgctagttcttgcacttatcatgagtaggaggtgcagctcgtcttgtg 40188181  T
Q  223 ttggcaacggta 234  Q
    |||||| |||||    
T  40188180 ttggcagcggta 40188169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 121 - 210
Target Start/End: Original strand, 12258374 - 12258463
Alignment:
Q  121 tatggtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtgggaggtgca 210  Q
    ||||||||||||||  |||||||||||||| ||||||||| |||||||||| ||||| | |  ||||||  | |||||||||||||||||    
T  12258374 tatggtggatagagttaaactcttagcttgaaagtggttcctggctaagtgtcctgccagtccctgctctctctatgagtgggaggtgca 12258463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 226
Target Start/End: Original strand, 33888617 - 33888720
Alignment:
Q  123 tggtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtgggaggtgcaacccgtcctttg 222  Q
    |||||||||||| | ||||||||| ||||||||||||   ||||||||||||||||| ||  |  ||  | ||||||||| |||||||||||||||| ||    
T  33888617 tggtggatagagtggaactcttagattggaagtggtttcgggctaagtgccctgctagttcatattctctctatgagtggaaggtgcaacccgtcctatg 33888716  T
Q  223 ttgg 226  Q
    ||||    
T  33888717 ttgg 33888720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 228
Target Start/End: Complemental strand, 23176995 - 23176890
Alignment:
Q  123 tggtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtgggaggtgcaacccgtcctttg 222  Q
    ||||| |||||| ||||||||||||||||||| ||||| | || ||||| | ||||| ||  ||| | | | |||||| ||||||||| |||||||| ||    
T  23176995 tggtgtatagagtgaaactcttagcttggaagcggttccttgccaagtgtcatgctagttcatgcacttatcatgagttggaggtgcagcccgtcctatg 23176896  T
Q  223 ttggca 228  Q
    ||||||    
T  23176895 ttggca 23176890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 26557917 - 26557861
Alignment:
Q  123 tggtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgcta 179  Q
    ||||||| ||||  ||||| ||||||||| ||||| || ||||||||||||||||||    
T  26557917 tggtggacagagttaaacttttagcttggtagtggctcctggctaagtgccctgcta 26557861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 123 - 234
Target Start/End: Original strand, 52372671 - 52372782
Alignment:
Q  123 tggtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtgggaggtgcaacccgtcctttg 222  Q
    ||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||| || |||||| |||||||||||||||||||||||| |||||||    
T  52372671 tggtggatagagcgaaactcttagcttagaagtggttcctggctaggtgccctgctagttcctgctctttttatgagtgggaggtgcaacccatcctttg 52372770  T
Q  223 ttggcaacggta 234  Q
    |||||| |||||    
T  52372771 ttggcagcggta 52372782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 126 - 234
Target Start/End: Complemental strand, 25410663 - 25410555
Alignment:
Q  126 tggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtgggaggtgcaacccgtcctttgttg 225  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||| || ||||| || |||||| || ||||||||||||||||| |||||| | |||||    
T  25410663 tggatagagtgaaactcttagcttggaagtggttcctggctaagtaccttgctagttcctgctctttctatgagtgggaggtgcagcccgtcttgtgttg 25410564  T
Q  226 gcaacggta 234  Q
     ||||||||    
T  25410563 ccaacggta 25410555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 120 - 234
Target Start/End: Original strand, 9644369 - 9644483
Alignment:
Q  120 ctatggtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtgggaggtgcaacccgtcct 219  Q
    ||||||||||||||||||||||||| | ||||||||||||| | |||||||| ||| ||| ||  ||||||||| |||| |||||||| || | ||||||    
T  9644369 ctatggtggatagagcgaaactcttgggttggaagtggttcctagctaagtgtcctactagttcttgctcctttcatgaatgggaggtacatctcgtcct 9644468  T
Q  220 ttgttggcaacggta 234  Q
    ||| ||||| |||||    
T  9644469 ttgctggcatcggta 9644483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 123 - 224
Target Start/End: Original strand, 51871204 - 51871305
Alignment:
Q  123 tggtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtgggaggtgcaacccgtcctttg 222  Q
    |||||||||||   |||||||||||||||||||||||| || ||||||||||||||| || ||| ||  | ||||||||||||||||| |||||||| ||    
T  51871204 tggtggatagaattaaactcttagcttggaagtggttcctgactaagtgccctgctagttcctgttctctctatgagtgggaggtgcagcccgtcctgtg 51871303  T
Q  223 tt 224  Q
    ||    
T  51871304 tt 51871305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 123 - 234
Target Start/End: Complemental strand, 44504048 - 44503937
Alignment:
Q  123 tggtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtgggaggtgcaacccgtcctttg 222  Q
    ||||||||| || ||| ||||||||||||||||||||| || ||||||| | || || || |||||| ||| |||||||||||||||| | |||||||||    
T  44504048 tggtggataaagtgaagctcttagcttggaagtggttcatgactaagtgtcgtggtagttcctgctcttttcatgagtgggaggtgcagctcgtcctttg 44503949  T
Q  223 ttggcaacggta 234  Q
     ||||| |||||    
T  44503948 ctggcaccggta 44503937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 122 - 210
Target Start/End: Original strand, 13297594 - 13297682
Alignment:
Q  122 atggtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtgggaggtgca 210  Q
    ||||||||||||| ||||||||||||||| || |||||| |||||||||| ||||||| || |||| | | | ||||||||||||||||    
T  13297594 atggtggatagagtgaaactcttagcttgaaattggttcatggctaagtgtcctgctagttcctgcacttatcatgagtgggaggtgca 13297682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 287 - 346
Target Start/End: Original strand, 52372835 - 52372895
Alignment:
Q  287 ctttgcctctacctatccggactgtcttcttgggtctctccttgcgc-ttttccttgctgg 346  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||    
T  52372835 ctttgcctctacctctccggcctgtcttcttgggtctctccttgcgctttttccttgctgg 52372895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 123 - 234
Target Start/End: Original strand, 40799652 - 40799763
Alignment:
Q  123 tggtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtgggaggtgcaacccgtcctttg 222  Q
    |||||||||||| ||||||||| ||||| |||| |||| | |||||||||  ||||| ||  ||||| ||| |||||||||||||||| | |||||||||    
T  40799652 tggtggatagagtgaaactcttggcttgaaagttgttcctagctaagtgcattgctagttcttgctcttttcatgagtgggaggtgcagctcgtcctttg 40799751  T
Q  223 ttggcaacggta 234  Q
     ||||| |||||    
T  40799752 ctggcatcggta 40799763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 123 - 208
Target Start/End: Original strand, 21926620 - 21926704
Alignment:
Q  123 tggtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtgggaggtg 208  Q
    |||||||||||| |||||||||||| |||||||||||| |||||||||||||||||| ||  || || | | ||||||||||||||    
T  21926620 tggtggatagagtgaaactcttagcctggaagtggttc-tggctaagtgccctgctagttcatgttcttatcatgagtgggaggtg 21926704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 137 - 217
Target Start/End: Complemental strand, 3227729 - 3227649
Alignment:
Q  137 aaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtgggaggtgcaacccgtc 217  Q
    |||||||||||||| ||||| ||| ||| |||||||||||||| | |||| ||  | ||||||||||| ||||||||||||    
T  3227729 aaactcttagcttgaaagtgattcctggttaagtgccctgctagtctctgttctctctatgagtgggaagtgcaacccgtc 3227649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 123 - 234
Target Start/End: Complemental strand, 18519 - 18408
Alignment:
Q  123 tggtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtgggaggtgcaacccgtcctttg 222  Q
    |||||||||||||||||||| ||| ||| ||||| |||| ||||||||||||||||| || |||| | | | |||||||||||||||||||||| || ||    
T  18519 tggtggatagagcgaaactcatagtttgaaagtgattctgggctaagtgccctgctagttcctgcacttatcatgagtgggaggtgcaacccgttctgtg 18420  T
Q  223 ttggcaacggta 234  Q
    |||||| |||||    
T  18419 ttggcagcggta 18408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 123 - 225
Target Start/End: Original strand, 43411515 - 43411617
Alignment:
Q  123 tggtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtgggaggtgcaacccgtcctttg 222  Q
    |||||||||||||||||||||||||||| ||||| ||| |||||||||| |||||||  | |||| | | | |||||||||||||||| |||||||||||    
T  43411515 tggtggatagagcgaaactcttagcttgaaagtgtttcctggctaagtgtcctgctagctcctgcacttatcatgagtgggaggtgcagcccgtcctttg 43411614  T
Q  223 ttg 225  Q
    |||    
T  43411615 ttg 43411617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 123 - 217
Target Start/End: Original strand, 10994433 - 10994527
Alignment:
Q  123 tggtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtgggaggtgcaacccgtc 217  Q
    ||||||||||||  |||||||||||||||||||||||| |||||||||||||||||| || | | ||  | ||||||||||||||||| ||||||    
T  10994433 tggtggatagagttaaactcttagcttggaagtggttcctggctaagtgccctgctagttcccgttctctctatgagtgggaggtgcagcccgtc 10994527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 41074655 - 41074599
Alignment:
Q  123 tggtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgcta 179  Q
    ||||||| | |||||||||||||||||| ||||||||| ||||||||||||||||||    
T  41074655 tggtggacaaagcgaaactcttagcttgaaagtggttcctggctaagtgccctgcta 41074599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 29682702 - 29682758
Alignment:
Q  123 tggtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgcta 179  Q
    ||||||||||||  ||||||||||||| ||||||||||  |||||||  ||||||||    
T  29682702 tggtggatagagttaaactcttagcttagaagtggttccaggctaagcaccctgcta 29682758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 123 - 228
Target Start/End: Original strand, 41650526 - 41650630
Alignment:
Q  123 tggtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtgggaggtgcaacccgtcctttg 222  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||  | |||| | |   |||||| || ||||||||||||||||||    
T  41650526 tggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgctctgctagctcctgcacttaccatgagt-ggtggtgcaacccgtcctttg 41650624  T
Q  223 ttggca 228  Q
    ||||||    
T  41650625 ttggca 41650630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 123 - 221
Target Start/End: Complemental strand, 27639542 - 27639444
Alignment:
Q  123 tggtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtgggaggtgcaacccgtccttt 221  Q
    ||||||||||||| ||| |||||||||||||||||||| ||||||| || ||||||| ||  ||| | | | |||||| ||||||||||||||||||||    
T  27639542 tggtggatagagcaaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtaggaggtgcaacccgtccttt 27639444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 228
Target Start/End: Original strand, 33861926 - 33862027
Alignment:
Q  126 tggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtgggaggtgcaacccgtcctttgttg 225  Q
    ||||||||| |||||| || |||||||||||| ||  |||||||||||||| || || |||||| ||| |||||||||||||| | ||||||||||| ||    
T  33861926 tggatagagtgaaact-ttggcttggaagtggctcccggctaagtgccctggtagttcctgctcttttcatgagtgggaggtgtagcccgtcctttgctg 33862024  T
Q  226 gca 228  Q
    |||    
T  33862025 gca 33862027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 123 - 228
Target Start/End: Complemental strand, 3465396 - 3465291
Alignment:
Q  123 tggtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtgggaggtgcaacccgtcctttg 222  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||| |  || ||| || |||| | |   |||||||||||||||||||| |||| ||    
T  3465396 tggtggatagagcgaaactcttagcttggaagtgtttcttggcgaagcgttctactagttcctgcacttaccatgagtgggaggtgcaacccatcctgtg 3465297  T
Q  223 ttggca 228  Q
     |||||    
T  3465296 ctggca 3465291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 45068216 - 45068115
Alignment:
Q  125 gtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtgggaggtgcaacccgtcctttgtt 224  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||  | || || | | | | ||||| ||||||||||||||||||||||||    
T  45068216 gtggatagagctaaactcttagcttggaagtggttcctggctaagtgccctggcagttcctacacttatcatgagggggaggtgcaacccgtcctttgtt 45068117  T
Q  225 gg 226  Q
    ||    
T  45068116 gg 45068115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 137 - 234
Target Start/End: Complemental strand, 50655154 - 50655057
Alignment:
Q  137 aaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtgggaggtgcaacccgtcctttgttggcaacggta 234  Q
    |||||||||||||||||||||||| |||||||||| ||||||| ||  ||||  ||  ||||||||||||||||||| |||||||||||||| |||||    
T  50655154 aaactcttagcttggaagtggttcctggctaagtgtcctgctagttcttgctttttccatgagtgggaggtgcaacctgtcctttgttggcagcggta 50655057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 123 - 219
Target Start/End: Complemental strand, 24065193 - 24065097
Alignment:
Q  123 tggtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtgggaggtgcaacccgtcct 219  Q
    |||||||||||| |||||||||| | |||||||||||| ||||||||| |||||||| || ||| |  | |||||| |||||||| |||||||||||    
T  24065193 tggtggatagagtgaaactcttaacctggaagtggttcatggctaagtaccctgctagttcctgttgttattatgaatgggaggtacaacccgtcct 24065097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 123 - 228
Target Start/End: Complemental strand, 30251491 - 30251386
Alignment:
Q  123 tggtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtgggaggtgcaacccgtcctttg 222  Q
    |||||||||||| ||||||||| ||||| ||||||||| |||||||||||||||  | ||  |||||  || |||||||||||||| | || ||||||||    
T  30251491 tggtggatagagtgaaactcttggcttgaaagtggttcctggctaagtgccctggaagttcttgctctgttcatgagtgggaggtgtagccggtcctttg 30251392  T
Q  223 ttggca 228  Q
     |||||    
T  30251391 ctggca 30251386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 228
Target Start/End: Original strand, 4866794 - 4866885
Alignment:
Q  137 aaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtgggaggtgcaacccgtcctttgttggca 228  Q
    |||||||||||||||||||||||| |||||||||||| ||||| |   ||| | | | ||||||||||||||||||| ||||| || |||||    
T  4866794 aaactcttagcttggaagtggttcctggctaagtgccttgctagtccttgcacttatcatgagtgggaggtgcaacctgtcctgtgctggca 4866885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 234
Target Start/End: Complemental strand, 23012434 - 23012323
Alignment:
Q  123 tggtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtgggaggtgcaacccgtcctttg 222  Q
    |||||||||||| ||||||||||| |||||| |||||| ||||||||||   ||||| ||||||| | | | |||| ||||||||||| | |||||| ||    
T  23012434 tggtggatagagtgaaactcttagtttggaattggttcatggctaagtgttgtgctagtttctgcacttatcatgaatgggaggtgcagcacgtcctgtg 23012335  T
Q  223 ttggcaacggta 234  Q
    ||| || |||||    
T  23012334 ttgacatcggta 23012323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 123 - 234
Target Start/End: Original strand, 19469649 - 19469759
Alignment:
Q  123 tggtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtgggaggtgcaacccgtcctttg 222  Q
    ||||||||||||| ||  |||||||||||||||||||| | | ||||||  |||||| || |||| | | | |||||||||||||| | || ||||||||    
T  19469649 tggtggatagagcaaagttcttagcttggaagtggttcctagttaagtg-tctgctagttcctgcacttatcatgagtgggaggtgtagcctgtcctttg 19469747  T
Q  223 ttggcaacggta 234  Q
    |||||| |||||    
T  19469748 ttggcatcggta 19469759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 204
Target Start/End: Complemental strand, 48309716 - 48309635
Alignment:
Q  123 tggtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtggga 204  Q
    |||||||||||| |||||||||||||||||||| ||||  ||||||||  ||||||| || ||| ||  | |||||||||||    
T  48309716 tggtggatagagtgaaactcttagcttggaagtcgttccgggctaagtttcctgctagttcctgttctctctatgagtggga 48309635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 123 - 216
Target Start/End: Complemental strand, 26982124 - 26982031
Alignment:
Q  123 tggtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtgggaggtgcaacccgt 216  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||| | || |||| ||| | ||||||||||||| || |||||    
T  26982124 tggtggatagagtaaaactcttagcttggaagtggttcttggctaagtgccctgcaagttcctgcacctatcatgagtgggaggttcagcccgt 26982031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 123 - 226
Target Start/End: Complemental strand, 2833393 - 2833286
Alignment:
Q  123 tggtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgctac----tttctgctccttttatgagtgggaggtgcaacccgtcc 218  Q
    |||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||     || ||||||  | ||||||||||||||||| |||||||    
T  2833393 tggtagatagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagctagttcctgctctctctatgagtgggaggtgcagcccgtcc 2833294  T
Q  219 tttgttgg 226  Q
    | ||||||    
T  2833293 tatgttgg 2833286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 125 - 228
Target Start/End: Original strand, 34213151 - 34213254
Alignment:
Q  125 gtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtgggaggtgcaacccgtcctttgtt 224  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||| ||||| ||  ||| | | | | ||||| |||||||| |||||||| ||||    
T  34213151 gtggatagagtgaaactcttagcttggaagtggttcatggctaagtgccatgctagttcatgcacttatcacgagtgtgaggtgcagcccgtcctgtgtt 34213250  T
Q  225 ggca 228  Q
    ||||    
T  34213251 ggca 34213254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 123 - 224
Target Start/End: Original strand, 4778033 - 4778134
Alignment:
Q  123 tggtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtgggaggtgcaacccgtcctttg 222  Q
    ||||||||||||  |||||||||| |||||||||||||  ||||| ||||||||||| |  ||||||  | ||||||||||||||||| |||||||| ||    
T  4778033 tggtggatagagttaaactcttagtttggaagtggttccaggctaggtgccctgctagtccctgctctctctatgagtgggaggtgcagcccgtcctgtg 4778132  T
Q  223 tt 224  Q
    ||    
T  4778133 tt 4778134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 123 - 224
Target Start/End: Original strand, 41640825 - 41640926
Alignment:
Q  123 tggtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtgggaggtgcaacccgtcctttg 222  Q
    ||||||| ||||  ||||||||| |||||||||||||   ||||||||||||||||| || ||||||    ||||||||||||||||| |||||||| ||    
T  41640825 tggtggacagagttaaactcttaacttggaagtggtttcgggctaagtgccctgctagttcctgctctccctatgagtgggaggtgcagcccgtcctgtg 41640924  T
Q  223 tt 224  Q
    ||    
T  41640925 tt 41640926  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 169
Target Start/End: Complemental strand, 1762080 - 1762039
Alignment:
Q  128 gatagagcgaaactcttagcttggaagtggttcttggctaag 169  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  1762080 gatagagcgaaactcttagcttggaagtggttcatggctaag 1762039  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 1045465 - 1045409
Alignment:
Q  123 tggtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgcta 179  Q
    |||||||||| |  ||||||| |||||||||||||||| ||||||||||||||||||    
T  1045465 tggtggatagggttaaactctcagcttggaagtggttcctggctaagtgccctgcta 1045409  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 31589153 - 31589115
Alignment:
Q  181 tttctgctccttttatgagtgggaggtgcaacccgtcct 219  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  31589153 tttctgctccttatatgagtgggaggtgcaacctgtcct 31589115  T

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Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 120 - 234
Target Start/End: Original strand, 51992 - 52106
Alignment:
Q  120 ctatggtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtgggaggtgcaacccgtcct 219  Q
    ||||||||||| |||| |||||||||||||||||||||||| |||||||||| | ||||| ||  ||| | || |||||||||||||||||||   ||||    
T  51992 ctatggtggatcgagctaaactcttagcttggaagtggttcctggctaagtgtcttgctagttcttgcactttatatgagtgggaggtgcaacatatcct 52091  T
Q  220 ttgttggcaacggta 234  Q
     |||||||| |||||    
T  52092 gtgttggcagcggta 52106  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 123 - 227
Target Start/End: Complemental strand, 9557462 - 9557358
Alignment:
Q  123 tggtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgctactttctgctccttttatgagtgggaggtgcaacccgtcctttg 222  Q
    |||||||| | || ||| |||||||||||||||| ||| || ||||||| |||||||  | |||| | | | |||||||||||||||| |||||||||||    
T  9557462 tggtggatggggcaaaattcttagcttggaagtgattcctgactaagtgtcctgctagctcctgcacttatcatgagtgggaggtgcagcccgtcctttg 9557363  T
Q  223 ttggc 227  Q
     ||||    
T  9557362 ctggc 9557358  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 9755758 - 9755702
Alignment:
Q  123 tggtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgcta 179  Q
    ||||||| | || ||||||||||| ||||||||||||   |||||||||||||||||    
T  9755758 tggtggacaaagtgaaactcttagtttggaagtggtttcgggctaagtgccctgcta 9755702  T

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Target: scaffold0042 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 83312 - 83255
Alignment:
Q  122 atggtggatagagcgaaactcttagcttggaagtggttcttggctaagtgccctgcta 179  Q
    |||||||||| ||  |||||||||||||||||||||||| || | ||||| |||||||    
T  83312 atggtggataaagtcaaactcttagcttggaagtggttcatgccgaagtgtcctgcta 83255  T

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