View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_high_3 (Length: 532)
Name: NF9839A_high_3
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 459; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 34 - 525
Target Start/End: Original strand, 1414021 - 1414512
Alignment:
| Q |
34 |
acatcattagtaccgtaaaaaagattaccattgtctaatgtttgtgtcaatcccatctctctgtctttttatccaacacgtgtctcaaagctattgttag |
133 |
Q |
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| T |
1414021 |
acatcattagtaccgtaaaaaagattaccattgtctaatgtttgtgtcaatcccatctctctgtctttttatccaacacgtgtctcaaagctattgttag |
1414120 |
T |
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| Q |
134 |
gcannnnnnnctcacaagtgtttgatccaaaagcatggtgtcccaaagcattctagcatgatccgtaaatacagcatgaaacacattatgtcaaatttac |
233 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1414121 |
gcatttttttctcacaagtgtttgatccaaaagcatggtgtcccaaagcattctagcatgatccgtaaatacagcatgaaacacattatgtcaaatttac |
1414220 |
T |
|
| Q |
234 |
gttttgacaaaattgtcgttgtttatatattagtgtacaacttaaaatttctatgaattagcctcatgaatttcatgaggttaattcatgtactttggtg |
333 |
Q |
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| T |
1414221 |
gttttgacaaaattgtcattgtttatatattagtgtacaacttaaaatttctatgaattagcctcatgaatttcatgaggttaattcatgtactttggtg |
1414320 |
T |
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| Q |
334 |
tttcaacctgtatgtgacatgtaaatttattcaagtttcaagtgacaaatgtgtgtaccctgcaatttataactttggtgactcaaattcagatactgga |
433 |
Q |
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| T |
1414321 |
tttcaacctgtatgtgacatgtaaatttattcaagtttcaagtgacaaatgtgtgtaccctgcaatttataactttggtgactcaaattcagatactgga |
1414420 |
T |
|
| Q |
434 |
actatatatgcaacatatacaagtgttcaacctcctaatggaataagcttctttggaaacatatcaggaagagcttctgatgtccatctcat |
525 |
Q |
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| T |
1414421 |
actatatatgcaacatatacaagtgttcaacctcctaatggaataagcttctttggaaacatatcaggaagagcttctgatggccgtctcat |
1414512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 286 - 525
Target Start/End: Original strand, 1419822 - 1420058
Alignment:
| Q |
286 |
atgaattagcctcatgaatttcatgaggttaattcatgtactttggtgtttcaacctgtatgtgacatgtaaatttattcaagtttcaagtgacaaatgt |
385 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||| |
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| T |
1419822 |
atgaattagcctcatgaattctatgaggttaattcatgtactttggtgtttcaacctgtatgtgacatgtacatttattcaagtttcaagtcatgaatgt |
1419921 |
T |
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| Q |
386 |
gtgtaccctgcaatttataactttggtgactcaaattcagatactggaactatatatgcaacatatacaagtgttcaacctcctaatggaataagcttct |
485 |
Q |
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| T |
1419922 |
gtgtaccctgcaatttataactttggtgactcaaattcagatactggaactgcatatgcaactttcttatgtaatcaacctcctaatggcataag---ct |
1420018 |
T |
|
| Q |
486 |
ttggaaacatatcaggaagagcttctgatgtccatctcat |
525 |
Q |
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| T |
1420019 |
ttggaaacatatcagggagagcttctgatggccgtctcat |
1420058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 379 - 525
Target Start/End: Original strand, 1410990 - 1411136
Alignment:
| Q |
379 |
caaatgtgtgtaccctgcaatttataactttggtgactcaaattcagatactggaactatatatgcaacatatacaagtgttcaacctcctaatggaata |
478 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| |||||||||||| |||| |||||||| ||||||| |||||| |
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| T |
1410990 |
caaatgtgtgtaccctgcaatttataactttggtgattcaaattcggataccggaactgtatatgcaacatttacaggtgttcaatctcctaacggaata |
1411089 |
T |
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| Q |
479 |
agcttctttggaaacatatcaggaagagcttctgatgtccatctcat |
525 |
Q |
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| T |
1411090 |
agcttctttggaaacatatcaggaagagcttctgatggccgtctcat |
1411136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 380 - 515
Target Start/End: Original strand, 1408109 - 1408244
Alignment:
| Q |
380 |
aaatgtgtgtaccctgcaatttataactttggtgactcaaattcagatactggaactatatatgcaacatatacaagtgttcaacctcctaatggaataa |
479 |
Q |
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||||||| ||||||||||||||| || ||||||||||||||||||||||||||| | | |||||| ||| ||| |||| ||||||||||| |||| |
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| T |
1408109 |
aaatgtgagtaccctgcaatttacaattttggtgactcaaattcagatactggagcagcaaatgcaatatacacagctgttacgcctcctaatggtataa |
1408208 |
T |
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| Q |
480 |
gcttctttggaaacatatcaggaagagcttctgatg |
515 |
Q |
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||| |||||||| || |||||||||||||||||| |
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| T |
1408209 |
gctactttggaagcaccacaggaagagcttctgatg |
1408244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 297 - 378
Target Start/End: Original strand, 1410884 - 1410965
Alignment:
| Q |
297 |
tcatgaatttcatgaggttaattcatgtactttggtgtttcaacctgtatgtgacatgtaaatttattcaagtttcaagtga |
378 |
Q |
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| T |
1410884 |
tcatgaattctatgaggctaattcatatactttggtgtttcaatctttatgtggcatgtacatttattcaagtctcaagtga |
1410965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 369
Target Start/End: Original strand, 1408010 - 1408080
Alignment:
| Q |
299 |
atgaatttcatgaggttaattcatgtactttggtgtttcaacctgtatgtgacatgtaaatttattcaagt |
369 |
Q |
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| T |
1408010 |
atgaattctatgagattaattcatgtactttggtttttcaatctgtgtgtgacatttacattcattcaagt |
1408080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 380 - 505
Target Start/End: Original strand, 3600507 - 3600632
Alignment:
| Q |
380 |
aaatgtgtgtaccctgcaatttataactttggtgactcaaattcagatactggaactatatatgcaacatatacaagtgttcaacctcctaatggaataa |
479 |
Q |
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|||||||| ||||| ||||| || |||||||||||||| ||||||||||||||| || |||||||||| || |||| | | ||||||||| |||| |
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| T |
3600507 |
aaatgtgtctacccagcaatatacaactttggtgactccaattcagatactggagctggatatgcaacaatggcagctgttgagcatcctaatggtataa |
3600606 |
T |
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| Q |
480 |
gcttctttggaaacatatcaggaaga |
505 |
Q |
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|||||||||||| ||| ||||||||| |
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| T |
3600607 |
gcttctttggaagcatctcaggaaga |
3600632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 380 - 505
Target Start/End: Original strand, 14339374 - 14339499
Alignment:
| Q |
380 |
aaatgtgtgtaccctgcaatttataactttggtgactcaaattcagatactggaactatatatgcaacatatacaagtgttcaacctcctaatggaataa |
479 |
Q |
| |
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|||||||| ||||| ||||| || |||||||||||||| ||||||||||||||| || |||||||||| || |||| | ||||||||| |||| |
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| T |
14339374 |
aaatgtgtctacccagcaatatacaactttggtgactccaattcagatactggagctggatatgcaacaacggcagctgttgagtatcctaatggtataa |
14339473 |
T |
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| Q |
480 |
gcttctttggaaacatatcaggaaga |
505 |
Q |
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|||||||||||| ||| ||||||||| |
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| T |
14339474 |
gcttctttggaagcatctcaggaaga |
14339499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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