View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9839A_high_39 (Length: 278)

Name: NF9839A_high_39
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9839A_high_39
NF9839A_high_39
[»] chr7 (3 HSPs)
chr7 (17-278)||(3437088-3437349)
chr7 (123-248)||(14798952-14799077)
chr7 (123-248)||(15245944-15246069)
[»] chr3 (3 HSPs)
chr3 (25-278)||(46240130-46240383)
chr3 (27-278)||(23541524-23541775)
chr3 (26-199)||(30038134-30038307)
[»] chr5 (1 HSPs)
chr5 (26-202)||(29878233-29878409)
[»] chr8 (1 HSPs)
chr8 (26-184)||(3921199-3921357)
[»] chr4 (3 HSPs)
chr4 (26-202)||(6869027-6869201)
chr4 (26-181)||(4497222-4497377)
chr4 (135-248)||(11318291-11318404)
[»] scaffold0300 (1 HSPs)
scaffold0300 (26-181)||(18134-18289)
[»] chr6 (1 HSPs)
chr6 (26-181)||(24676042-24676197)
[»] scaffold0140 (1 HSPs)
scaffold0140 (147-247)||(40053-40153)
[»] chr1 (1 HSPs)
chr1 (26-129)||(36915336-36915439)
[»] scaffold0121 (1 HSPs)
scaffold0121 (135-248)||(43494-43607)
[»] chr2 (1 HSPs)
chr2 (135-248)||(18131561-18131674)


Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 278
Target Start/End: Original strand, 3437088 - 3437349
Alignment:
Q  17 gacatcacttaccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctg 116  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3437088 gacaacacttaccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctg 3437187  T
Q  117 cactcagtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  3437188 cactcagtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagcagttgaccaccatactttgtctttagat 3437287  T
Q  217 gacagccatcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatca 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3437288 gacagccatcaaccccaataaatggcctacatccatttgtaaacccttttttgcatccatca 3437349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 248
Target Start/End: Original strand, 14798952 - 14799077
Alignment:
Q  123 gtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagc 222  Q
    ||||||||||  ||||| || | ||||||||| || |||||||| ||||| || ||||| |  |  | |||||| ||||| |||||||| || ||||| |    
T  14798952 gtttcaacaacaccaaaagctaaaggaaagtattgatcatttggatctcttcctacagccaccaacaattgacctccatattttgtcttcaggtgacacc 14799051  T
Q  223 catcaaccccaataaatggcctacat 248  Q
    ||||||| ||||||||||| ||||||    
T  14799052 catcaacaccaataaatggtctacat 14799077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 248
Target Start/End: Original strand, 15245944 - 15246069
Alignment:
Q  123 gtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagc 222  Q
    ||||||||||  ||||| || | ||||||||| || |||||||| ||||| || ||||| |  |  | |||||| ||||| |||||||| || ||||| |    
T  15245944 gtttcaacaacaccaaaagctaaaggaaagtattgatcatttggatctcttcctacagccaccaacaattgacctccatattttgtcttcaggtgacacc 15246043  T
Q  223 catcaaccccaataaatggcctacat 248  Q
    ||||||| ||||||||||| ||||||    
T  15246044 catcaacaccaataaatggtctacat 15246069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 25 - 278
Target Start/End: Complemental strand, 46240383 - 46240130
Alignment:
Q  25 ttaccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagt 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46240383 ttaccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagt 46240284  T
Q  125 ttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagcca 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||    
T  46240283 ttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagcagttgacccccatactttgtctttagatgacaacca 46240184  T
Q  225 tcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatca 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  46240183 tcaaccccaataaatggcctacatccatttgtaaacccttttttgcaaccatca 46240130  T

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Target: chr3; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 27 - 278
Target Start/End: Complemental strand, 23541775 - 23541524
Alignment:
Q  27 accttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagttt 126  Q
    |||||||| |||||||||||||| ||||||||  ||||  | |||||||||||||  |  | |||||||||||| ||||||||| |||| ||||  ||||    
T  23541775 accttctgttgatctgatatgaagacatatctcctatcccttccaatgtcatccattaaaagctccatgaaccatttccagctttccctacactttgttt 23541676  T
Q  127 caacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatc 226  Q
    | || || |||||||| |  ||||| || |||||||||||||| ||||||||| | || || ||||||||||||||||||||||||| |||||| |||||    
T  23541675 ctactattccaaatgccaatggaaaatattggtcatttgggtccctaccaacaactattagaagttgacccccatactttgtctttaaatgacatccatc 23541576  T
Q  227 aaccccaataaatggcctacatccatttgtaaacccttttttgcagccatca 278  Q
     ||||||| |||||| ||||| |||||  | || ||||| || |||||||||    
T  23541575 taccccaacaaatggtctacacccattgatgaaacctttcttacagccatca 23541524  T

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Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 199
Target Start/End: Original strand, 30038134 - 30038307
Alignment:
Q  26 taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt 125  Q
    |||||| || |||||||||||||| |||||||| |||||||  || || || |||| |||||||| | ||||||| |||||  || || |||||||||||    
T  30038134 taccttttgttgatctgatatgaacacatatctcttatcttcacctatatcttccatcagcaactgcgtgaaccatttccaagtttccttgcactcagtt 30038233  T
Q  126 tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgaccccc 199  Q
    ||||| |  ||||| || || ||||| |||||||||||||||||||| || |||||||| |  |||||||||||    
T  30038234 tcaactaccccaaaagctagtggaaaatactggtcatttgggtctcttcctacagcaatcaacagttgaccccc 30038307  T

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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 202
Target Start/End: Complemental strand, 29878409 - 29878233
Alignment:
Q  26 taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt 125  Q
    |||||| || |||||||||||||| |||||||| |||||||  || || || |||| ||||||||  |||||||| ||||| ||| || |||||||||||    
T  29878409 taccttttgttgatctgatatgaacacatatctcttatcttgacctatatcttccatcagcaactgtatgaaccatttccaactttccttgcactcagtt 29878310  T
Q  126 tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccata 202  Q
    ||||| |  ||||| || || ||||| |||||||||||||||||||| || |||||||| |  ||||| ||||||||    
T  29878309 tcaactaccccaaaagctagtggaaaatactggtcatttgggtctcttcctacagcaatcaacagttgccccccata 29878233  T

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Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 26 - 184
Target Start/End: Original strand, 3921199 - 3921357
Alignment:
Q  26 taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt 125  Q
    |||||| || |||||||||||||| |||||||| |||||||  || || || |||| ||||||||  |||||||| ||||| ||| || |||||||||||    
T  3921199 taccttttgttgatctgatatgaacacatatctcttatcttgacctatatcttccatcagcaactgtatgaaccatttccaactttccttgcactcagtt 3921298  T
Q  126 tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaat 184  Q
    ||||| |  ||||| || || ||||| |||||||||||||||||||| || ||||||||    
T  3921299 tcaactaccccaaaagctagtggaaaatactggtcatttgggtctcttcctacagcaat 3921357  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 202
Target Start/End: Complemental strand, 6869201 - 6869027
Alignment:
Q  26 taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt 125  Q
    |||||| || |||||||||||||| |||| ||||  |||||  || || || |||| |||||||| ||||||||| ||||| ||| || |||||||||||    
T  6869201 taccttttgttgatctgatatgaacacatctctt--atcttgacctatatcttccatcagcaactgcatgaaccatttccaactttccttgcactcagtt 6869104  T
Q  126 tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccata 202  Q
    ||||| |  ||||| || || |||||||||||||||||||||||||| || |||||||| |  ||||| ||||||||    
T  6869103 tcaactaccccaaaagctagtggaaagtactggtcatttgggtctctccctacagcaatcaacagttggcccccata 6869027  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 26 - 181
Target Start/End: Original strand, 4497222 - 4497377
Alignment:
Q  26 taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt 125  Q
    ||||||||| |||||||||||||| |||||||||||||| || || ||||||| || || || |||||| ||||| |||||||||||| | |  |||  |    
T  4497222 taccttctgttgatctgatatgaagacatatcttttatcatttcctatgtcattcatcaacagctccataaaccatttccagcttgccttactttcaact 4497321  T
Q  126 tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagc 181  Q
    |||||||  ||||| || || ||||| ||||||||||| ||||| || ||||||||    
T  4497322 tcaacaacaccaaaggccagtggaaaatactggtcattggggtcccttccaacagc 4497377  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 248
Target Start/End: Original strand, 11318291 - 11318404
Alignment:
Q  135 ccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaa 234  Q
    |||||||| | |||||| || || ||||||||||||||  |||| ||||| || ||||| || |||||  | |||||||||||||| |||||||| || |    
T  11318291 ccaaatgctaaaggaaaatattgatcatttgggtctcttgcaactgcaataagaagttgtcctccatatctagtctttagatgacaaccatcaacaccga 11318390  T
Q  235 taaatggcctacat 248  Q
    |||| || ||||||    
T  11318391 taaaaggtctacat 11318404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 181
Target Start/End: Complemental strand, 18289 - 18134
Alignment:
Q  26 taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt 125  Q
    ||||||||| |||||||||||||| ||||||||||| || || || ||||||| || || || |||||| ||||| |||||||||||| | |  ||   |    
T  18289 taccttctgttgatctgatatgaagacatatcttttgtcatttcctatgtcattcatcaacagctccataaaccatttccagcttgccttactttctact 18190  T
Q  126 tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagc 181  Q
    |||||||  ||||| || || ||||| ||||||||||| ||||| || ||||||||    
T  18189 tcaacaacaccaaaggccaggggaaaatactggtcattggggtcccttccaacagc 18134  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 181
Target Start/End: Original strand, 24676042 - 24676197
Alignment:
Q  26 taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt 125  Q
    ||||||||| |||||||||||||| ||||||||||| || || || ||||||| || || || |||||| ||||| |||||||||||| | |  ||   |    
T  24676042 taccttctgttgatctgatatgaagacatatcttttgtcatttcctatgtcattcatcaacagctccataaaccatttccagcttgccttactttctact 24676141  T
Q  126 tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagc 181  Q
    |||||||  ||||| || || ||||| ||||||||||| ||||| || ||||||||    
T  24676142 tcaacaacaccaaaggccagtggaaaatactggtcattggggtcccttccaacagc 24676197  T

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Target: scaffold0140 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 247
Target Start/End: Original strand, 40053 - 40153
Alignment:
Q  147 ggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaataaatggcctac 246  Q
    ||||| ||||||||||||||||||||||||||| |||| |  ||   ||| |||||||| ||||| |||||||| |||||||| || ||||| |||||||    
T  40053 ggaaaatactggtcatttgggtctctaccaacaacaattaaaagagtacctccatacttggtcttaagatgacacccatcaactcctataaagggcctac 40152  T
Q  247 a 247  Q
    |    
T  40153 a 40153  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 129
Target Start/End: Complemental strand, 36915439 - 36915336
Alignment:
Q  26 taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt 125  Q
    |||||| || |||||||||||||| |||||||| |||||||  || || || ||||  ||||||| ||||||||| ||||| ||| || |||||||||||    
T  36915439 taccttttgttgatctgatatgaacacatatctcttatcttgacctatatcttccattagcaactgcatgaaccatttccaactttccttgcactcagtt 36915340  T
Q  126 tcaa 129  Q
    ||||    
T  36915339 tcaa 36915336  T

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Target: scaffold0121 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 248
Target Start/End: Complemental strand, 43607 - 43494
Alignment:
Q  135 ccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaa 234  Q
    |||||||| | |||||| || || ||||||||| |||| ||||| ||||| || ||||| || |||||  | |||||||||||||| |||||||| || |    
T  43607 ccaaatgctaaaggaaaatattgatcatttgggcctcttccaactgcaataagaagttgtcctccatatctagtctttagatgacaaccatcaacaccga 43508  T
Q  235 taaatggcctacat 248  Q
    |||| || ||||||    
T  43507 taaaaggtctacat 43494  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 248
Target Start/End: Original strand, 18131561 - 18131674
Alignment:
Q  135 ccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaa 234  Q
    |||||||| | |||||| || || ||||||||| |||| ||||| ||||| || ||||| || |||||  | |||||||||||||| |||||||| || |    
T  18131561 ccaaatgctaaaggaaaatattgatcatttgggcctcttccaactgcaataagaagttgtcctccatatctagtctttagatgacaaccatcaacaccga 18131660  T
Q  235 taaatggcctacat 248  Q
    |||| || ||||||    
T  18131661 taaaaggtctacat 18131674  T

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