View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_high_4 (Length: 509)
Name: NF9839A_high_4
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_high_4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 21 - 509
Target Start/End: Original strand, 12147794 - 12148282
Alignment:
| Q |
21 |
atcaccaatagatgcaacccttgcactcaaactagccacaactgcaccacttctttctgtcccaatgccacctccagctttaagaagaggccacatgtgc |
120 |
Q |
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| T |
12147794 |
atcaccaatagatgcaacccttgcactcaaactagccacaactgcaccacttctttctgtcccaatgccacctccagctttaagaagaggccacatgtgc |
12147893 |
T |
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| Q |
121 |
tgatttagaaattcacagacttagatacaaaattttgactcaaactacatgccctaaggcttctataacctcatacacataaagaacccaattttacttc |
220 |
Q |
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| T |
12147894 |
tgatttagaaattcacagacttagatacaaaattttgactcaaactacatgccccaaggcttctataacctcatacacataaagaacccaattttacttc |
12147993 |
T |
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| Q |
221 |
taaaattatcataaatagataaacaaatnnnnnnnctgtaatgaaattcagattggtgttaccttgataaccaagataggaccgacggcattaacctcat |
320 |
Q |
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| T |
12147994 |
taaaattataataaatagataaacaaataaaaaaactgtaatgaaattcagattggtgttaccttgataaccaagataggaccgacggcattaacctcat |
12148093 |
T |
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| Q |
321 |
atgcaagcattaaagatgacttctccaatttgttcaatgtggtttctgtataatatacataactaataaaatcaactaacacatatttgtaagaaacata |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12148094 |
atgcaagcattaaagatgacttctccaatttgttcaatgtggtttctgtataatatacataactaataaaatcaactaacacatatttgtaagaaacatt |
12148193 |
T |
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| Q |
421 |
aaacatgataatagatggttttaactcacagttatacatcactagcccccattacacactcccatctatacagttgatcgatattctat |
509 |
Q |
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| T |
12148194 |
aaacatgataatagatggttttagctcacagttatacatcactagcccccattacacactcccatctatacagttgatcgatattctat |
12148282 |
T |
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