View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9839A_high_40 (Length: 277)
Name: NF9839A_high_40
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_high_40 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 277
Target Start/End: Original strand, 46239893 - 46240154
Alignment:
| Q |
16 |
ggacatcatggatgacatgaggacgaatcatgcagtgggtatcaccaaaggtagggcgtggaaagcaaaacagatagctcagaaaattgttgagggtgat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
46239893 |
ggacatcatggatgacatgaggacgaatcatgcagtgggtatcaccaaaggtagggcgtggaaagctaaacagatagctcagaaaattgttgagggtgat |
46239992 |
T |
|
| Q |
116 |
gctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaacagggtgagtatcactgttgataggccagatccag |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||| |
|
|
| T |
46239993 |
gctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaatagtgtgagtatcaatgttgataggccagatccag |
46240092 |
T |
|
| Q |
216 |
gattacaacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttaca |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
46240093 |
gattacaacccaggtttggatctttttacttttgttttgatggttgcaaaaaagggtttaca |
46240154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 24 - 270
Target Start/End: Original strand, 23541295 - 23541541
Alignment:
| Q |
24 |
tggatgacatgaggacgaatcatgcagtgggtatcaccaaaggtagggcgtggaaagcaaaacagatagctcagaaaattgttgagggtgatgctgattg |
123 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| || | |||||||| ||||| ||||||||||| ||||||| |||||||| |||||||||||| | |
|
|
| T |
23541295 |
tggatgacatgaggacaaaccatgcagtgggtattacaatgggtagggcttggaaggcaaaacagattgctcagagtattgttgatggtgatgctgatag |
23541394 |
T |
|
| Q |
124 |
tcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaacagggtgagtatcactgttgataggccagatccaggattacaa |
223 |
Q |
| |
|
||||| | ||||| |||| |||||||| ||||||||||| ||| | ||||||| | |||| || | ||| ||||| ||| ||| | | ||| |
|
|
| T |
23541395 |
gcaatatgccatgatttggaggtatgctgcagaacttaaaagggtgaatgctggaaataatgtgaagataaatgtggatagaccaaccccatcaatccaa |
23541494 |
T |
|
| Q |
224 |
cccaggtttggatctttttacttttgttttgatggctgcaaaaaagg |
270 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||| || ||||| |
|
|
| T |
23541495 |
cccaggtttggttctttctacttttgttttgatggctgtaagaaagg |
23541541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 277
Target Start/End: Complemental strand, 3437574 - 3437325
Alignment:
| Q |
16 |
ggacatcatggatgacatgaggacgaatcatgcagtgggtatcaccaaaggtagggcgtggaaagcaaaacagatagctcagaaaattgttgagggtgat |
115 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3437574 |
ggacatcatcgatgacatgaggacgaatcatgcagtgggta------------gggcgtggaaagcaaaacagatagctcagaaaattgttgagggtgat |
3437487 |
T |
|
| Q |
116 |
gctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaacagggtgagtatcactgttgataggccagatccag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
3437486 |
gctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaacagtgtgagtatcaatgttgataggccagatccag |
3437387 |
T |
|
| Q |
216 |
gattacaacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttaca |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3437386 |
gattacaacccaggtttggatctttttacttttgttttgatggatgcaaaaaagggtttaca |
3437325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University