View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_high_59 (Length: 228)
Name: NF9839A_high_59
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_high_59 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 44735853 - 44735626
Alignment:
| Q |
1 |
gagctcctttattttgtaattatcatatacctttatctgaacgtggctacatgtcccttttataatatgataatgatgttggatcatgaagtaatattat |
100 |
Q |
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| T |
44735853 |
gagctcctttattttgtaattatcatatacctttatctgaacgtggctacatgtcccttttataatatgataatgatgttggatcatgaagtaatattat |
44735754 |
T |
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| Q |
101 |
atttacaggcaaatccaagaatgacccttttcactggtagttcaagagtggcagagaagttggctgttgatttgaagggccgtgttaaattggaagatgc |
200 |
Q |
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| T |
44735753 |
atttacaggcaaatccaagaatgacccttttcactggtagttcaagagtggcagagaagttggctgttgatttgaagggccgtgttaaattggaagatgc |
44735654 |
T |
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| Q |
201 |
cggatttgactggaaaatattgggccct |
228 |
Q |
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| T |
44735653 |
cggatttgactggaaaatattgggccct |
44735626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 180
Target Start/End: Complemental strand, 17780585 - 17780444
Alignment:
| Q |
44 |
tggctacatgtcccttttataatatgataatgatgttggat-----catgaagtaatattatatttacaggcaaatccaagaatgacccttttcactggt |
138 |
Q |
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| T |
17780585 |
tggctacatgttcatattataatatggtaatgatgttggattggatcatgaattagttctatatttacaggaaaattcaagagtggaccatttcactcat |
17780486 |
T |
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| Q |
139 |
agttcaagagtggcagagaagttggctgttgatttgaagggc |
180 |
Q |
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| T |
17780485 |
agttcaagagtggcagagaagtttgctgatgatctgaagggc |
17780444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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