View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9839A_low_10 (Length: 496)

Name: NF9839A_low_10
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9839A_low_10
NF9839A_low_10
[»] chr1 (3 HSPs)
chr1 (106-495)||(15792678-15793068)
chr1 (416-445)||(32638459-32638488)
chr1 (417-445)||(32587200-32587228)
[»] chr8 (3 HSPs)
chr8 (410-451)||(33684878-33684919)
chr8 (407-445)||(25161255-25161293)
chr8 (418-451)||(32691767-32691800)
[»] chr7 (2 HSPs)
chr7 (407-445)||(21238847-21238885)
chr7 (416-445)||(38957342-38957371)
[»] chr5 (1 HSPs)
chr5 (417-445)||(27253315-27253343)
[»] chr4 (1 HSPs)
chr4 (417-445)||(36768850-36768878)
[»] chr3 (1 HSPs)
chr3 (417-445)||(28525038-28525066)
[»] chr2 (1 HSPs)
chr2 (417-445)||(39621495-39621523)


Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 106 - 495
Target Start/End: Original strand, 15792678 - 15793068
Alignment:
Q  106 tgcattgtattgaagtaacg-tatcttcttgttttatagttttgacttgaattgtgttggtgattgcttcctagttagttgacttttaattggaaaattt 204  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  15792678 tgcattgtattgaagtaacggtatcttcttgttttatagttttgacttgaattgtgttggtgattgcttactagttagttgacttttaaatggaaaattt 15792777  T
Q  205 tagttctaatttttgtttgcggggagattgaatccacgatctccttattactccgatcactgtttagggatgatgatgagtagagtttgggcagggaaca 304  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15792778 tagttctaatttttgttagcggggagattgaatccacaatctccttattactccgatcactgtttagggatgatgatgagtagagtttgggcagggaaca 15792877  T
Q  305 atagtacttgttcccttatccacaattggacaaaatacctgtatccactatagcatagacacttttgatccaaggcatgtgcggtgtctcacatcgtgtc 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  15792878 atagtacttgttcccttatccacaattggacaaaatacctgtatccactatagcatagacacttttgatccaaggcatgtgcggtgtctcatatcgtgtc 15792977  T
Q  405 actgtctgactcgacactgacacatgtgattacattcaattgtgtcannnnnnnaaatagacacccgtgttgacgtgttcgtgtcagtatg 495  Q
    | ||||||||||||||||||||||||||||||| |||||||||||||       ||||||||||| ||||||| |||||||||||||||||    
T  15792978 attgtctgactcgacactgacacatgtgattacgttcaattgtgtcatttttttaaatagacacctgtgttgatgtgttcgtgtcagtatg 15793068  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 445
Target Start/End: Complemental strand, 32638488 - 32638459
Alignment:
Q  416 cgacactgacacatgtgattacattcaatt 445  Q
    ||||||||||||||||||||||||||||||    
T  32638488 cgacactgacacatgtgattacattcaatt 32638459  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 445
Target Start/End: Complemental strand, 32587228 - 32587200
Alignment:
Q  417 gacactgacacatgtgattacattcaatt 445  Q
    |||||||||||||||||||||||||||||    
T  32587228 gacactgacacatgtgattacattcaatt 32587200  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 410 - 451
Target Start/End: Original strand, 33684878 - 33684919
Alignment:
Q  410 ctgactcgacactgacacatgtgattacattcaattgtgtca 451  Q
    ||||||||||||| |||||||||||||||||||||| |||||    
T  33684878 ctgactcgacactaacacatgtgattacattcaattttgtca 33684919  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 407 - 445
Target Start/End: Complemental strand, 25161293 - 25161255
Alignment:
Q  407 tgtctgactcgacactgacacatgtgattacattcaatt 445  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  25161293 tgtctgacacgacactgacacatgtgatgacattcaatt 25161255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 451
Target Start/End: Complemental strand, 32691800 - 32691767
Alignment:
Q  418 acactgacacatgtgattacattcaattgtgtca 451  Q
    |||||||||||||||||||||||||||| |||||    
T  32691800 acactgacacatgtgattacattcaattatgtca 32691767  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 407 - 445
Target Start/End: Complemental strand, 21238885 - 21238847
Alignment:
Q  407 tgtctgactcgacactgacacatgtgattacattcaatt 445  Q
    |||||||||| ||||| ||||||||||||||||||||||    
T  21238885 tgtctgactccacactaacacatgtgattacattcaatt 21238847  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 445
Target Start/End: Original strand, 38957342 - 38957371
Alignment:
Q  416 cgacactgacacatgtgattacattcaatt 445  Q
    ||||||||||||||||||||||||||||||    
T  38957342 cgacactgacacatgtgattacattcaatt 38957371  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 445
Target Start/End: Complemental strand, 27253343 - 27253315
Alignment:
Q  417 gacactgacacatgtgattacattcaatt 445  Q
    |||||||||||||||||||||||||||||    
T  27253343 gacactgacacatgtgattacattcaatt 27253315  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 445
Target Start/End: Original strand, 36768850 - 36768878
Alignment:
Q  417 gacactgacacatgtgattacattcaatt 445  Q
    |||||||||||||||||||||||||||||    
T  36768850 gacactgacacatgtgattacattcaatt 36768878  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 445
Target Start/End: Complemental strand, 28525066 - 28525038
Alignment:
Q  417 gacactgacacatgtgattacattcaatt 445  Q
    |||||||||||||||||||||||||||||    
T  28525066 gacactgacacatgtgattacattcaatt 28525038  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 445
Target Start/End: Original strand, 39621495 - 39621523
Alignment:
Q  417 gacactgacacatgtgattacattcaatt 445  Q
    |||||||||||||||||||||||||||||    
T  39621495 gacactgacacatgtgattacattcaatt 39621523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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